| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3052 |
|---|
| Symbol | |
|---|
| ID | 8226626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3732017 |
|---|
| End bp | 3734278 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644930883 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003087432 |
|---|
| Protein GI | 255036811 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.129578 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTAC GCATACTATT CTTACTCAGC TTCCTGACGT CTCATGCATT TGCACAGTTT
ACGCTTTCCG GCAAAGTATC GCTCGAAGGG CAAGCCGAAC CCGCGCTGGG CGCGTCGGTT
TATATCCAGG AACTAAAAAC GGGTGCCACC GCGGATACCG CCGGGAATTA TCTCATCACC
GGCATTCCGA AGGGCACCTA TACGGTAAGG GTCAGTTTTG TGTCGATGCC GACAGTCACC
GAGAAGAATG TAAAAATCGA ACGCAATATC GTCAGGGATT TCGTCCTGAA ATCGGGTGCC
AATTCCCTCG ACGAAGTGGT AGTGACGGGC ACAATGAAAG AAGTTTCCAA ACTCGACAGC
CCAGTGCCGG TTGACATTAT TACTTCTAAA TTCATCTACA AAAACCCCGT TCCGAGCATT
TTCGAAGGAT TGAGCTATGT GAATGGCGTG CGGCCACAGC TCAACTGTAA CGTTTGCAAC
ACGGGCGACA TCCACATTAA CGGACTGGAA GGCCCGTACA CCATGGTGCT CATCGACGGA
ATGCCGATGG TAAGCGGACT GTCGACGGTT TATGGACTTT CGGGTATTCC AAACAGCCTG
ATCGATCGCG TGGAAATCGT GAAAGGACCG GCGTCTACCC TATACGGTTC GGAAGCGGTA
GGTGGCCTCA TTAATATTAT TACTAAAAAT CCGTTGAAAG CGCCGGTGTT TTCGGCCGAC
GTGTTCAGCA CCACCTGGCG CGACTATAAT GTGGACCTCG GCGTGAAATT CACACCGGGC
GAAAAGAGCA GCTCATTGCT CGGCATCAAT TATTTCAACT ACCAGAACCC GATCGACAAC
AATAAGGACG GATTCACCGA CCTGACGCTC CAGAACCGCA TTTCGATATT CAACAAATGG
TCGTTCAAGC TCAAAGACGA CCGCCAGGCC AACATTGCCG CCCGCTATTA CTATGAAGAT
CGCTGGGGCG GGCAAATGCA GTGGGACCGC TCCTACCGCG GCGGTGATGA AATTTATGGT
GAAAGCATTT ATACCAAACG ATTTGAATTG CTCGGGAACT ACCAGCTCCC GCTCAGCGAA
AAAGTGACGC TGCAATACTC CTTCAGCTCG CATAACCAGA ACTCGGCCTA CGGAAATGTG
CCATTTGTGG CCGACCAGAA GATCGCCTTC GCGCAGCTTT TGTGGGATAA GGAAATCGGG
AAGCACAGCT TGCTGATGGG AACGCCGTTC CGCTACACGT TTTACAATGA CAACACGCCC
GCCACGCGCT ATGCCGATGG CCACGACCAT GCCGACAAAA TTTACCTGCC GGGCATATTC
ATTCAGGACG AAATCAAAAC CGGGCCGCAT TCGGTGTTGC TGGGCGCGCG ATACGATTAC
AACAGCCGCC ACGGAAGCAT ATTCACGCCA AGGGCCGCAT ACAAATACAA ATTTAACCAG
ACGGACGTGG TGAGGCTGAA TGTCGGTCGC GGTTTCCGGA TCGTGAACCT GTTCACCGAA
GACCACGCCG CATTGACCGG CTCGCGGGAT GTGATCCTGA AAGAGGAATT GAAACCCGAG
CAAAGTTGGA ACGCGAATAT CAACCTGGTC AAGAAAATCG TAACGGGCAA TTCGTTCATC
GGATTCGACG CATCGGTATT TTATACACAC TTCACAAACC GCATTCTCCC CGATTACGAT
ACCAATCCGA ACCAGATCAT TTACGACAAT CTCAACGGGT ATGCCGTTTC CAAAGGCATT
AGCCTGAACC TCGATTTCAA CTTCCCATTC CCGCTCAAAA TCATCGCCGG CGGGACATAC
ATGGACAATT TTCAGAAAGA GAACGGCGTG CGTTTCAGGC CGGTACTTAC CGAAAAGTTC
ACCGGCACGT GGTCGTTTTC GTACGAAATC CAGAAAGCCG GGCTTTCGGT TGACTACACC
GGAAACATTT ATGGCCCCAT GCGTCTGCCG GTTCTCAGCG AGGAAGATCC GCGCGCGGCC
AATTCTCCGG TATGGTCTTT GCAGAATATC CAGCTCACCA AAAAATTCAA CAATGGACTG
GAAGTTTACG GAGGCGTCAA AAACCTGCTC AATTTTACTC CACCCGCCAA TTCGATCGCC
CGCGCGAACG ATCCGTTCGA CAAAAACGTG CAGTTCGACG GGCAGGGCCA GGTTATTGCC
ACACCTGACA ATCCGTACCG ACTGACGTTC GATCCGTCGT ACGTTTACGC GCCCAACCAG
GGTATCAGGG CATTTGCCGG GCTGCGTTAT ACATTAAGAT GA
|
|---|
| Protein sequence | MKLRILFLLS FLTSHAFAQF TLSGKVSLEG QAEPALGASV YIQELKTGAT ADTAGNYLIT
GIPKGTYTVR VSFVSMPTVT EKNVKIERNI VRDFVLKSGA NSLDEVVVTG TMKEVSKLDS
PVPVDIITSK FIYKNPVPSI FEGLSYVNGV RPQLNCNVCN TGDIHINGLE GPYTMVLIDG
MPMVSGLSTV YGLSGIPNSL IDRVEIVKGP ASTLYGSEAV GGLINIITKN PLKAPVFSAD
VFSTTWRDYN VDLGVKFTPG EKSSSLLGIN YFNYQNPIDN NKDGFTDLTL QNRISIFNKW
SFKLKDDRQA NIAARYYYED RWGGQMQWDR SYRGGDEIYG ESIYTKRFEL LGNYQLPLSE
KVTLQYSFSS HNQNSAYGNV PFVADQKIAF AQLLWDKEIG KHSLLMGTPF RYTFYNDNTP
ATRYADGHDH ADKIYLPGIF IQDEIKTGPH SVLLGARYDY NSRHGSIFTP RAAYKYKFNQ
TDVVRLNVGR GFRIVNLFTE DHAALTGSRD VILKEELKPE QSWNANINLV KKIVTGNSFI
GFDASVFYTH FTNRILPDYD TNPNQIIYDN LNGYAVSKGI SLNLDFNFPF PLKIIAGGTY
MDNFQKENGV RFRPVLTEKF TGTWSFSYEI QKAGLSVDYT GNIYGPMRLP VLSEEDPRAA
NSPVWSLQNI QLTKKFNNGL EVYGGVKNLL NFTPPANSIA RANDPFDKNV QFDGQGQVIA
TPDNPYRLTF DPSYVYAPNQ GIRAFAGLRY TLR
|
|---|
| |