| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2523 |
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| Symbol | |
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| ID | 8226095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 3105139 |
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| End bp | 3108198 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644930355 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003086906 |
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| Protein GI | 255036285 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAC ATCTATTCCG CCTGTTCTTG CTGACGGGCT TGGTATTCAC AGGCTTTGAC
CGTGCTCTGG CGCAGGACGC CATTACCGGT GTGGTTAAGG ACGAATCCGG GCAGGGATTG
CCCGGCGCAA CGGTGGTCGA AAAAGGCTCT GCCAAATATG CCCTGACAGA CATCGACGGC
AAATTCAGCA TTCCGCCGGC CAAGGAGTTT CCATTTACAT TGCAAATCAG CATTACCGGT
TTCCAGCAGC AGGAAATCGA GATTTACGAA CAACCCGCCG AGGCGGTGGA AGTGGTGCTT
AAGACCGCTA ACCTGCTCGA CGAGGTGGTG GTAGTGGGCT ACGGAGAGCA AAAGCGGAAG
GACATTACCG GTTCGGTGGC TTCGGTTCCG ATTGAAATTA AAAGCCAGCC GGTTGCATCG
GTAGAGCGGC TGTTACAGGG CTCCGTGGCG GGCGCGGTGG TGACGCAAAC GTCCGGGCAG
CCGGGCGGAG GCGTGAGCGT GCAGATACGC GGTAACAACT CGATCACCGC GGGAAGCGAT
CCATTGTATG TCATAGACGG CTTTCCCATT AACAACGACT ACAACCTCAC CGACGCCGGT
GTTACGAACG GTTCGAAGAT CAACCCGCTT TCTTCCATTA ACACGGCGGA TATCGAAAAC
ATCGACGTGC TGAAAGATGC TTCTGCCACA GCGATTTACG GTTCGCGCGG GGCGAACGGG
GTCGTGATTA TCACCACCAA AAGCGGGAGC AAAAACAAAT CGTCTATCAA TTATGACGCC
TTTTACGGTT CGCAAAAAGT ACTGCGCACG TTGCCATTGC TCAATGCCGC ACAATGGTGG
CAGCTGCGCA AGGACGCGGC GGGCAACTCA GGGAAAACGG CCTCTGTGCC TACTATCGCG
GGTTATTCGC TCGATACCAC CGGCGTGGGT ACCGACTGGC AGGATGCCGC TTTCCGTAGC
GCGTCCATTC AGAGCCACAA CCTTTCGATT CTCTCGGGAT CGGACAAAAC GAAGCTTGCG
ATTTCGGGTA ACTATTTCAA ACAGAATGGT ATCCTGCAAA ATACGGACTT CCGCCGTTTC
TCGGCGAGGA TCAATCTGGA CCACCAGTAC AGCGATCGCC TGCGCATTTT CACAAGCCTG
AATGCGAGCA ACACCAAGGC AAATGTGGCG CCGGCCGCCA TCGTGGCCAA CCTGCTGCTG
ACGCCGCCCG CATTGCCCAT TTACCAGAAT GACGGCTCAT TTGTCGTGAA CAGCCCATTC
GAATCGGCTT TGCAAAACCC CATTAACTCG CTTTATAACC AGCTGAACGA GACGATTACC
AACCGGTTTT TGGGCAATGT TTCGGGTGAA TATACCCTTG CGGAGGGCCT GAAAGCGAAA
GTGCTGATCG GTGCAGACAT TGTGGGCAAC AAGCAGAACC GTTACCTGCC TAGTACTACG
TCGGAAGGTC AGGCGCTGAG CGGTAATGCG ATTGTAGGGT CGATTTTTAC GACCAACTGG
CTGAACGAGA ATACGATAAG CTACGACAAG GAGATTAACG AGAAGAACAA AATCAATGCG
GTAGCGGGTT TTACGGCACA GGTTTCCCAA ACCAAAGGGG CCATTGCGGA AGCGGCCGGC
TTCGCGACAG ACGATTTTGA ATATAACAAC CTGGCAACAG GTATTACCAA CATCGCACCC
CGCTCGCTGG CCGATAAATG GGCCCTGGCG TCGTATCTGG GCCGGATCAA CTACATTTTC
GACGAGCGCT ACCTGTTCAC ATTCACCGTG CGTGCGGATG GTTCGTCGAA ATTTGGTAGC
GGCAACAAAT GGGGTTATTT CCCGTCGGCG GCGATCGGCT GGAATGTGAA TGAGGAAAAA
TTCTTCCAGC GGTTCAAAAA GATCAGCCTG CTGAAACTGC GACTCAGCGC CGGACAGACT
GGTAATCAGA GCATTCCGTC GTACCAGTCG CTGTCGCAGC TCAGCTATTT CCGTTACAAC
TTCTCGAATA CGACCGTCTC CGGCTTTGCG CCCAATACGG TGCCGAACCC GAACCTCGGC
TGGGAAAAAA CATTCCAGAC AGACTTTGGA GTGGACCTGG GTTTATTTAA AAACCGCATC
AACATTATCG CCGACTATTA CTACAAGAAA ACGACCGATT TGCTGCTAAC ACGCACCGTT
CCAGGTACTT CCGGGCTTTC GGATTTCTAT AATGGCCAGG CGTCCGTGGT GTATCAGAAC
ATTGGAGCAG TGTCGAATCA GGGTATTGAG TTATATGTCA ATTCAAGGAA CCTGGAAGGT
GCTTTCAAAT GGAACACGAT TTTTATTGTT TCAAAAAACA CCAACAAAAT CCTGAGCCTG
GGCGACGGTG TGGACCAGAT CATTCCGGTC ATTTCCGCGC CATCCATTGC GAAAGTGGGC
TATCCGCTGG GTTCATTCAT CGTGTACCAA ACCGACGGAA TCATTCAGGA AGGTGATGCG
CCGCTGACGC CGCAGCAAAA CAAAAGCCCG GGCGGCCAGA AGTACAAGGA CATTAACCGT
GACGGCGTGA TTACCCAGGC AGGCGACCGG GTGGTAGTGA AAAACCAGCC GGCATTAACA
GGCGGTATCA CCAACACATT CAATTACAAG GGATTTGACC TCACGATTTT CTTCCAGGCA
TCGCTTGGCG GCAAGCTCTA CAATGCGAAC CGCGCCAACC TTGAACTCGG AACAGGCTAC
GTGAATGCTT CCACCGTGGT ACTCGACCGC TGGACGCCGA CCAACACGAA CACCGACGTG
AAGGCAGCCT ACCAGGACCC CGCGATCACG ATTTCCGACC GGTTTATCGA AGACGCGACT
TACTATCGCC TGAAAAACCT CTCGCTGGGC TACAACTTCC CGAAAGAGCT GTTGTCGAAA
CTGCACATTG AAAACCTCCG CATTTACGTA TCGGCGCAAA ACCCGAAAAC CTGGACAAAA
TACACCGGTT TCGATCCCGA AGTGAGCCTG AACGGGCAGT CGCTGATCAA CAAGGGCGTG
GATCAGGGCG TGTATCCGAA CAACAAATCG TACCAGGCAG GTCTGTCCCT CACATTCTGA
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| Protein sequence | MIKHLFRLFL LTGLVFTGFD RALAQDAITG VVKDESGQGL PGATVVEKGS AKYALTDIDG
KFSIPPAKEF PFTLQISITG FQQQEIEIYE QPAEAVEVVL KTANLLDEVV VVGYGEQKRK
DITGSVASVP IEIKSQPVAS VERLLQGSVA GAVVTQTSGQ PGGGVSVQIR GNNSITAGSD
PLYVIDGFPI NNDYNLTDAG VTNGSKINPL SSINTADIEN IDVLKDASAT AIYGSRGANG
VVIITTKSGS KNKSSINYDA FYGSQKVLRT LPLLNAAQWW QLRKDAAGNS GKTASVPTIA
GYSLDTTGVG TDWQDAAFRS ASIQSHNLSI LSGSDKTKLA ISGNYFKQNG ILQNTDFRRF
SARINLDHQY SDRLRIFTSL NASNTKANVA PAAIVANLLL TPPALPIYQN DGSFVVNSPF
ESALQNPINS LYNQLNETIT NRFLGNVSGE YTLAEGLKAK VLIGADIVGN KQNRYLPSTT
SEGQALSGNA IVGSIFTTNW LNENTISYDK EINEKNKINA VAGFTAQVSQ TKGAIAEAAG
FATDDFEYNN LATGITNIAP RSLADKWALA SYLGRINYIF DERYLFTFTV RADGSSKFGS
GNKWGYFPSA AIGWNVNEEK FFQRFKKISL LKLRLSAGQT GNQSIPSYQS LSQLSYFRYN
FSNTTVSGFA PNTVPNPNLG WEKTFQTDFG VDLGLFKNRI NIIADYYYKK TTDLLLTRTV
PGTSGLSDFY NGQASVVYQN IGAVSNQGIE LYVNSRNLEG AFKWNTIFIV SKNTNKILSL
GDGVDQIIPV ISAPSIAKVG YPLGSFIVYQ TDGIIQEGDA PLTPQQNKSP GGQKYKDINR
DGVITQAGDR VVVKNQPALT GGITNTFNYK GFDLTIFFQA SLGGKLYNAN RANLELGTGY
VNASTVVLDR WTPTNTNTDV KAAYQDPAIT ISDRFIEDAT YYRLKNLSLG YNFPKELLSK
LHIENLRIYV SAQNPKTWTK YTGFDPEVSL NGQSLINKGV DQGVYPNNKS YQAGLSLTF
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