| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0897 |
|---|
| Symbol | |
|---|
| ID | 8224466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1055786 |
|---|
| End bp | 1056445 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644928761 |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003085315 |
|---|
| Protein GI | 255034694 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.181032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC TTTCAGGGGC CGATGCCAGA GCTATTATAA TTGTTGATAC CTATCCCGTA
TCCCGTCAAG GTTTGGCCGC CTTGTTGACA GCCGAATTCC CGCAGTGGTC CATCGCCCAA
GCGAAAACCG TCAATGAGCT GACCGGATCC GAGCCTGGCC TTTCGTCCGG TCTTTTTATT
TTGGTAATCA ATTCCGACTT TGAAGAGGAA GAGTATAATC CTGTGACAGA GCTCAGAAAC
ACGTACCCTA ATGCCCACAT TATTTTGTAC GGGGAAGAGC TCAGGGCCGA AGCGGCTATT
GATTATCTCA AGAATGGCGT AAAAGGCTAT ATATCGAAGC ATAAAGACCT GACCGAACTC
GTCAGCTGCG TGCTCACAGT GAATGCAGGC GGGACTTATC TCAGCGACGA CCATCTGAAA
TCCTTGTTCC GTTACCTGAT CGAAAATTAC AAGACATCCC GAAAGCAAGA TCTTTTGACC
CCACGCCAGA GAGAGGTTGC CAAACTACTT GTTCAGGGTC TGACAACATC GGGCATCGCA
GAGCACACGG GTTTGCACAT CTCTACGATC AGCACCTTTA AAGCAGCCAT TTTCGCTAAA
TTAGGGATCG ACAACGTCGT AAAATTGAAG CAATTGTTAG CGGATGAGGA TAATGTCTAA
|
|---|
| Protein sequence | MTELSGADAR AIIIVDTYPV SRQGLAALLT AEFPQWSIAQ AKTVNELTGS EPGLSSGLFI
LVINSDFEEE EYNPVTELRN TYPNAHIILY GEELRAEAAI DYLKNGVKGY ISKHKDLTEL
VSCVLTVNAG GTYLSDDHLK SLFRYLIENY KTSRKQDLLT PRQREVAKLL VQGLTTSGIA
EHTGLHISTI STFKAAIFAK LGIDNVVKLK QLLADEDNV
|
|---|
| |