| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2831 |
|---|
| Symbol | |
|---|
| ID | 3757854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2816973 |
|---|
| End bp | 2818100 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637783732 |
|---|
| Product | substrate-binding protein, putative |
|---|
| Protein accession | YP_389321 |
|---|
| Protein GI | 78357872 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00332473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATATC CTCGCGGCCG AACATTGTTT GCGCTCACAC TGGGGGCAGC ATGCCTGCTG
ATGGCGGCAG CCCTGTATCT GGCAACGCCT CCCGGTGACA TTCTGGTGGG CTTTTCCGGC
CCGCTGGAAG GAAAATTCTC CGACCTCGGC GTGGAAGGCC GTAACGCCGC GCAGCTGGCC
ATCGAAGACA TCAACGCCGC AGGCGGTATT GACGGGCGGC GGCTGCGCCT TGTCACCGCA
CATGACGGTT ACACGCAAAA AGACGCGGTG GAGGCCGACA GCCATCTTGC CGGACAGCGG
GTGGCCGCCG TCATAGGGCA CATGACCAGC AGCCAGCAGC TGGCCGTGAT GGCCGTGCAC
AGGTCTGTGG TCTATGTCTC GCCCACGGTC TCCACGTATC AGCTTACCGG CATGGATGAC
AATTTTTTCC GTGTCATTGC AGACAACGAC GCCACAGCCC GTGATCTGGG CCTGTTTGCC
GCCTCCCGCG GGGTGCAGAC GGCCGTGGCC CTGCTGGACA CGGTGAATGA AGATTTTTCA
CGGACGTTTA TCAACGCTGC GGCCAGAGGC TTCACCTCGG CGGGAGGCAC GGTAGTCAAC
ATCATTCCGT TTTCCTCGTC CGTTCCTTCT TCGCTGCTGG ATGCCGCCGC CTCGGCCGCT
GATTCCGGCG CGCAGGCCGT ATTTGTGGCG GCTTCTGCGC GTGACACCGC GTTTGTGCTG
GCCCAGATGG CCCAGAACGG ATTCTCGGGC CCGAAGTTCT CCTCCACATG GGCACTGACT
CCCGCGCTGA TAGCACAGGG CGGTACCGCA GTGGAAGACA CGTTCTTCTG CCATCCTTAT
CCCACACTGG CCGAACTGCC CGCCCACCGC AACTTCATCA GCCGGTTCAG CGAGCGGTTC
GGCTGGGAAC CGAGCTTTCC GGGCCTGTTT GCCTATACCG CCGTGCGGTT GCTGCAGCGC
GGGCTGGAAA AAACACAGGG ACGGACGGCG GGCCTGCGTG AAGCCCTGAA AAGTATCAGA
CAACTGGATG GTCTGTGCGG CCCCATCACG CTGGATGCAT ACGGAGACGC ACACATGCCG
TTCTTCATTT CCACAGTGCG CAACGGCGCA TTCGAGCCGG TACGATGA
|
|---|
| Protein sequence | MPYPRGRTLF ALTLGAACLL MAAALYLATP PGDILVGFSG PLEGKFSDLG VEGRNAAQLA
IEDINAAGGI DGRRLRLVTA HDGYTQKDAV EADSHLAGQR VAAVIGHMTS SQQLAVMAVH
RSVVYVSPTV STYQLTGMDD NFFRVIADND ATARDLGLFA ASRGVQTAVA LLDTVNEDFS
RTFINAAARG FTSAGGTVVN IIPFSSSVPS SLLDAAASAA DSGAQAVFVA ASARDTAFVL
AQMAQNGFSG PKFSSTWALT PALIAQGGTA VEDTFFCHPY PTLAELPAHR NFISRFSERF
GWEPSFPGLF AYTAVRLLQR GLEKTQGRTA GLREALKSIR QLDGLCGPIT LDAYGDAHMP
FFISTVRNGA FEPVR
|
|---|
| |