| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3606 |
|---|
| Symbol | |
|---|
| ID | 8117437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 4086397 |
|---|
| End bp | 4088097 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644853980 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003005893 |
|---|
| Protein GI | 251791172 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGT CTGCTTCGCA GCCGTTGTTG CGCGTCGAAG GGCTAAACGT CACCTTCCCC
AGCCCGCATG GGCCGGTGGA GTCGGTGCGT AACCTCTCTT TCCAGGTTAA TCCCGGTGAA
ATTCTGGCGC TGGTGGGGGA ATCCGGCTCC GGTAAATCGG TCACTGCCCG CACGTTGGTC
GGGCTGGCGG GTGAACGGGC GCAGATTCAG GCCGATGCCA TTGAGCTGGT GCGCCACGAC
GGCAGCCCGT GCGATCTGCA ACAACTGAGT GCCCGCCAAT GGCAACAGGT ACGCGGCCGG
GAAATCGGCT TTGTGTTGCA GGATGCGCTG GTCTCGCTCG ACCCATTGCG GCGTATCGGG
CAGGAAGTGG CGGAGCCGTT GCTGACCCAT AAACTGGCGG CGCGTAACGA CGTGGCGACC
CGCGTCGCTG AGCTACTGGC GCAGGTCGGT ATTCCCGATC CGGCTAATCG CGCGGCACAA
TACCCGCATG AGCTGTCCGG CGGTTTGCGC CAGCGGGCGC TGATTGCCTC GGCGCTGGCG
GCCGGGCCAA AACTGTTGAT CGCCGATGAA CCCACCACCG CGCTGGATGC CACCGTGCAG
CAACAGGTAC TCAAGCTGTT TACCGCATTG GCGCAGGCTG GGCACGGCGT ACTGCTGATC
ACCCACGATC TGGCGGTGGT ATCGCAAGTC GCCGATCGGG TCATGGTGAT GCAGAAAGGC
GCACTGGTGG AACGCGGTCC GGCACGGCAG GTGCTGTCCG CGCCGCAACA CCCGTACACC
CGCCGGCTGC TGGCCGCCAT TCCAACCGCC GCCACCCGCG GCAACTGGCT GGCGGGAGAA
AACCCACTCA GCCCGCAAGC ATCGGCCCTG CTCTCTTCCG CCGGCGAGTC AGACGCAAAG
AATGGGCCGG CACTGCAAGT CGACGGCGTA TCCGTCTCGT TCAAACGCCC GGACGGCAGC
CGCATGACGG CGGTGAATAA CATTTCGCTG ACGGTAGAAC GCGGAGAAAC GCTGGGTATC
GTCGGCGAGT CCGGTTCCGG CAAAACCACG CTCGGGAAGG TGGTGCTGGC GTTACAATCA
CCGGACAGCG GTGAAGTTCG CTTGTCCGGC CGCCCCTGGA GCACGCTTTC TGAACGGGAG
CGTCGTCCGT TACGCGCCCG GATTCAAACC ATTACCCAGG ACCCGCTCAG CTCGTTCGAT
CCACAGTTCA CCATTGAACA GATCCTGCTG CAGCCATTAC GGCTACGACG TGATCTGAGC
CCGCAAGCCC GCCAGCAGCG TATTCTTGCC CTGCTGGATC TGGTGGGGCT GTCGCCAACG
TTGCTCGCCA GACGGCCGCA ATCCTTGTCC GGCGGGCAAC GCCAGCGTAT CTCCATCGCT
CAGGCGCTGG CGGCGGAGCC AGAGGTGCTG ATTTGCGACG AGCCGGTATC GGCGCTGGAT
GTCACCACAC AGGCGCAGGT GCTGGACCTG CTGGTCGCGT TGCAGCAACG TCTGCACTTG
TCGATGGTGT TTATCTCCCA CGATTTGGGC GTGGTGCAAC ACATGAGCCA TCGGATTGCG
GTGATGAAAG ACGGCGACGT GGTGGAGCGC GGCACCGTGG AACAGATTTT CAATCAACCA
CAGCACCCCT ATACCCGACA ATTACTGTCC ACCGTCGCAC CAGTGGTCAT TAATCGACAA
AATAACGATA TTTACGCCTG A
|
|---|
| Protein sequence | MSQSASQPLL RVEGLNVTFP SPHGPVESVR NLSFQVNPGE ILALVGESGS GKSVTARTLV
GLAGERAQIQ ADAIELVRHD GSPCDLQQLS ARQWQQVRGR EIGFVLQDAL VSLDPLRRIG
QEVAEPLLTH KLAARNDVAT RVAELLAQVG IPDPANRAAQ YPHELSGGLR QRALIASALA
AGPKLLIADE PTTALDATVQ QQVLKLFTAL AQAGHGVLLI THDLAVVSQV ADRVMVMQKG
ALVERGPARQ VLSAPQHPYT RRLLAAIPTA ATRGNWLAGE NPLSPQASAL LSSAGESDAK
NGPALQVDGV SVSFKRPDGS RMTAVNNISL TVERGETLGI VGESGSGKTT LGKVVLALQS
PDSGEVRLSG RPWSTLSERE RRPLRARIQT ITQDPLSSFD PQFTIEQILL QPLRLRRDLS
PQARQQRILA LLDLVGLSPT LLARRPQSLS GGQRQRISIA QALAAEPEVL ICDEPVSALD
VTTQAQVLDL LVALQQRLHL SMVFISHDLG VVQHMSHRIA VMKDGDVVER GTVEQIFNQP
QHPYTRQLLS TVAPVVINRQ NNDIYA
|
|---|
| |