| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_3159 |
|---|
| Symbol | trmE |
|---|
| ID | 8378855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 3571715 |
|---|
| End bp | 3573088 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645002395 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_003159650 |
|---|
| Protein GI | 256830922 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAA ACAACGACAC CATCGTGGCC ATCGCCACTC CTCCCGGCCA GGGCGCCATC
GGCATTGTCC GTCTGAGCGG ACCCTCGGCC GGGGAAATCG CGCGCTCTCT TTTCCATTCC
TCCCGCCCGG GGTTCACGGA CTTCAAGCCC TACCAGCTGC ATCACGGGCA ACTGCGTGAC
GGACGAGGAA ATTTTCTGGA CGAAGTGCTG GCGGCTTTCA TGCCTGGTCC GGGCTCGTTC
ACGGGCGAGG ATGTTGTCGA GCTGCAGTGT CATGGCGGCG GGGCCATTTT GCGCCGAGTG
GTGGAGGAAT GCCTGGCCGG TGGTGCTCGG TTGGCCGAGG CGGGCGAGTT TTCCAAGCGG
GCCTTTCTTA ATACGCGCAT GGATCTGACC CAGGCCGAGG CCATCATGGA GCTGGTGGGC
GCGCCCACCG CCGTGGCCGT GGGCCTGGCC GGGAGCAAGC TTGAGGGCCT GCTGGCGCAT
CGCATCGGCC AGCTTCGGGC CGGTCTTGAA AGCGTGCGCG TGCAGCTTTG CGTGGCCGTG
GATTTTCCCG AAGACGAGGT CGAGTGCCTT GCGCCGCAGG ACCTGGCCAG GGACATTGCC
GAGATTCGCG AGGCCATGGC CGAGCTGGCC GACAATTACG ACCGTGGCCG CTGCTGGCGC
GACGGGGCCC TGGTGGTCCT GGCCGGGCAG GTCAACGCGG GCAAGTCGAG TCTGATGAAC
GCGATCCTGG GCATCAACCG GGCCATCGTG ACCGACATCC CGGGCACGAC GCGGGATTAT
CTGGAAGAGT CGGTGCAGAT CGACGGCCTG CCGGTGCGGT TGGTGGACAC GGCGGGCCTG
CGGGCCGCGC TCGATAGCGT GGAACTCTTG GGCATCGAAC GCAGCCGCGA GCTTCTGGCC
CGGGCAGACC TCGTGCTGCT GGTCATCGAC TCCGAGCTTG GGCCGGGGGC CGAGGATCTG
GATCTGGCGG CGGAGACGGA AAACCTTCTG GTTGTGGCCA ACAAGATGGA TCTGGTCGCC
GGAGAGCCAG CCTGGACGAG GGAAAGCCCT TGGAAAGACA AGGAGCTCTG CCGTCTTTGC
GCCAAGCACG GCCAGGGCGT TTCCGGGCTG CTGGCCGCGA TCCGCCGCAT GGTGGCCGCC
ACCGGTGCTC CCGAAGCCGG AACGCTGGTG CCGAACCTGC GCCAGCACAC TGCCCTAGTC
CGCGCCGCGG AAGAGCTGGC TCACCTGCTG GACGAACTGG CCGCCGGACT GCCCTACGAC
ATCCTCTCCG TGCGCCTGGA CACGGCCTGC GCCATCTTGG CCGAAATCAC GGGCGAGATC
ACCTCAGAAG AGGTGCTTCG CGCCGTGTTC GACGGGTTTT GCATCGGGAA GTGA
|
|---|
| Protein sequence | MNTNNDTIVA IATPPGQGAI GIVRLSGPSA GEIARSLFHS SRPGFTDFKP YQLHHGQLRD
GRGNFLDEVL AAFMPGPGSF TGEDVVELQC HGGGAILRRV VEECLAGGAR LAEAGEFSKR
AFLNTRMDLT QAEAIMELVG APTAVAVGLA GSKLEGLLAH RIGQLRAGLE SVRVQLCVAV
DFPEDEVECL APQDLARDIA EIREAMAELA DNYDRGRCWR DGALVVLAGQ VNAGKSSLMN
AILGINRAIV TDIPGTTRDY LEESVQIDGL PVRLVDTAGL RAALDSVELL GIERSRELLA
RADLVLLVID SELGPGAEDL DLAAETENLL VVANKMDLVA GEPAWTRESP WKDKELCRLC
AKHGQGVSGL LAAIRRMVAA TGAPEAGTLV PNLRQHTALV RAAEELAHLL DELAAGLPYD
ILSVRLDTAC AILAEITGEI TSEEVLRAVF DGFCIGK
|
|---|
| |