| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3526 |
|---|
| Symbol | |
|---|
| ID | 3567391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3776475 |
|---|
| End bp | 3778154 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637681998 |
|---|
| Product | Phage integrase |
|---|
| Protein accession | YP_286725 |
|---|
| Protein GI | 71909138 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.00532036 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00586759 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTGG ATAAAAACGT GCCTAAGCCG TACCCTGATC CTGACAGCGG AATCTACTAC
ACGAACTTCC GCATTCCTGC CGATCTCGTC CCCCATTACA ACAAAACGCA CATTCAAAAG
ACTTTGCGTA CAAGGGACAA GAAAAAGGCC AAAGACCTAA ACGACGAGCG CTGGTTTCTT
CTCCTTCGCG AGTTCGACCG AATCCGACGT GAGCGCACCC TCGGCGTTTC GATGACTGAA
GAGTTCATCC CCCACCTCTT AGACGAGTGG CTGCATTTCA GCCTTAGAGA AGATGAAGAG
TTGCGTCTTC GCTGTTCATC AGCGAGAACC AACGAAAACA GTGAGCATGT CTATTACGGC
ATGGTCGACG AGTTGCGAGA GGGGGCGCGT ACCGGCAAAC ATCCTGACTT TTTGCTGCGT
GATGCTGCGT GGTTCTTCAA ACAGAAGGGT ATCGAGTACG ACAGTCGCAG CATTGCCTTC
GCCAAGTTCA TCGAGGAGCT TTCCCCAAGG TATGCACGTT ACCTCAACAC TCTGGCTTCC
AGAGATCAGG GCGAACGTGA GCCAACCCCT CCGCCCCCAC AGCAATCGTT AATCCCGCTG
TCGCAAGTCA CCAAGGAGTT CCTTGGCAGT CGCTCAAAGG GCAAGGCTAC GGCGCTGAAG
AAAGACTCCG CTTGCGTGGA CAAGCTATTG GAGATAGTTG GAGACAAGCC CATCACTGCA
CTCAAGCAGC AGGATATTCG CGACTTCTTC GATGTGGTTC AGCGTCTTCC TTCGCAGCGT
GGCGGCCCCA AGAAACCGAA AGCGGTGACG TTGAGGGCAT GGGCTGGCGA TGAAGTGACG
ATGTCGCCGG AGACGTTCAA GAACAACTAC GTTGCTCCGA TTCGGCATCT TCTCAAGTGG
GCGAAGAGTA TGTACCACGA TCAAGGGTTT CCGGTTGGCC TAACCGTCGA CGCCATCACC
TATCAAGGTA CGCGAGTGAA AGGCGAGGAC AAGCAACGTG CTTTCAAACA GCCTGAGCTT
GAGCGCCTGT TTCTTGGCGA GGAAATGCAA GCGATTGCCA GCGATCCGGA AAAGGCCGGT
CGTTACTGGC TGCCAATGCT TGGCCTATAC ACCGGCGCCC GTATCAACGA AGTTTGTCGG
ATCAATCCTG AGGTCGATTG GATCGAGCAA GAAGGGATTC AGTGCCTAAG TATTACGACA
GAGACAGAAC CTGGCGAAGA CATCACCAAG AGCATCAAAA CAGGTACTCC GCGCATTGTC
CCGATCCATC CTAAACTCAT TGAGCTAGGT TTTCTCGCGT ACCTTGAGAG GGTTAAAGCT
AGCGGTACAG GCCGACTGTT TCCAGAGTTT AAGCCGAAGG GTGGCAAGGC CGGAGAACGA
GCGCGAGAGT GGTTCTCGTC GTTTGTTGCC GATACAGGGT TACGGGACGA CACCCCGTTC
GCGAAAATCA CAGGCTTCCA CGCATTTCGT CACACGCTGA TTACCTACGC GGCGAATCAC
GAAGATGCGT CTATGGAATC CGCAATCGAC CAGATCACGG GACACGTAGG GCAAGGCTCT
GCGGTGAAGC GTGGGTACAT TTCCAGTCGC GCGATCAAAC GTGCGTACGA GACTGTTTGC
AAGGTGGATT TTGGCCTTAC ATTCTGGATG ACCAAGGTTT GGCAAGGGGA AAGCAGATGA
|
|---|
| Protein sequence | MKLDKNVPKP YPDPDSGIYY TNFRIPADLV PHYNKTHIQK TLRTRDKKKA KDLNDERWFL
LLREFDRIRR ERTLGVSMTE EFIPHLLDEW LHFSLREDEE LRLRCSSART NENSEHVYYG
MVDELREGAR TGKHPDFLLR DAAWFFKQKG IEYDSRSIAF AKFIEELSPR YARYLNTLAS
RDQGEREPTP PPPQQSLIPL SQVTKEFLGS RSKGKATALK KDSACVDKLL EIVGDKPITA
LKQQDIRDFF DVVQRLPSQR GGPKKPKAVT LRAWAGDEVT MSPETFKNNY VAPIRHLLKW
AKSMYHDQGF PVGLTVDAIT YQGTRVKGED KQRAFKQPEL ERLFLGEEMQ AIASDPEKAG
RYWLPMLGLY TGARINEVCR INPEVDWIEQ EGIQCLSITT ETEPGEDITK SIKTGTPRIV
PIHPKLIELG FLAYLERVKA SGTGRLFPEF KPKGGKAGER AREWFSSFVA DTGLRDDTPF
AKITGFHAFR HTLITYAANH EDASMESAID QITGHVGQGS AVKRGYISSR AIKRAYETVC
KVDFGLTFWM TKVWQGESR
|
|---|
| |