| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1224 |
|---|
| Symbol | |
|---|
| ID | 3569408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1327942 |
|---|
| End bp | 1330146 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637679691 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_284450 |
|---|
| Protein GI | 71906863 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.0461762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.318013 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCAATT CTCATCGGGC TGGTCAAGCG CTGTCGCGGG CATTTGCTAA ACTGCGTGCC
ATGCGAAAAA TCTGTGCCGG TCTCACTGTT GTCATCGCCC TGTCCGGATG CGGGCAGGCG
TGGAACGATC CATATCCGAT TGCCGACGCG GGCCGCAACA TCCTCTACAC GGCTTTTACC
GATCGCCCGA AGCATCTGGA TCCGGCGCAG TCCTACACGG AGGACGAGAT CGCTTTTACC
GCGCAGATCT ATGAACCGCC ACTGCAATAC CACTACCTGA AGCGGCCGTA CGAACTGATC
CCATCGACGG TCGAGCAGGT GCCTGTACTT CGCTTTTTCG ATGCGGCCGG CCGGGAGTTG
CCGCACGATG CGCCTGTCGA GCGCATTGCC GAGAGCGTCT ACGAACTGAA ACTGAAGCCG
GGTATCCGTT TTCAACCGCA CCCGGCCTTT GCTGTCGATG CCAATGGTCA ACCGGTATTC
GGGGGCAAAA ATCAGGCGGA TGGCCGGCAG ACGGTAGGTG ATTTTCCGTC GACCGGTACC
CGTGAACTGA CCGCCGACGA CTACATCTAC CAGATTAAGC GCCTGGCCCA TCCGCGCCTG
CATTCGCCGA TTTTTGGCAT GATGGCCGAC AAGATCGTTG GCCTGAAAGA ACTCGGCGAA
AACCTTCAGA AAGCGGCCAA GGACAAACCG GCGGACGAAT GGCTCGATCT TGATACCTTT
CCGCTGGCCG GTGTCGAGAA GGTGGATAGC CGCACCTGGC GTATTCGCAT CAAGGGCAAG
TACCCGCAGT TCCTTTATTG GTTGGCCATG CCCTTCTTCG CCCCGGTGCC GCGCGAGGCT
GACCGTTTCT TTGCCCAACC GGGCATGGCA GTGAAGAACC TGACGCTGGA CTGGTGGCCG
GTCGGTACGG GGCCTTACCT GCTCAGTGAG AATGATCCGA ATCGCCGCAT GGTGCTGTCA
CGCAATCCGA ATTTCCATGG CCAGGCCTAT CCCTGTGAAG GGGAGCCCGG TGACCGAGAG
GCCGGGCTGC TGAATGATTG CGGCAAAGCG CTGCCCTTCA TCGATCAGGC CATCTTCAAC
CGCGAGAAGG AGGCGATCCC GTACTGGAAC AAGTTCCTGC AGGGTTACTA CGATGCCTCG
GGGATTTCTT CGGACAGCTT CGACCAGGCC GTGCGCGTCA ATGTCGGCGG CGATGTGGCG
CTGACTGACG AGATGCGCGA CAAGGGCATC CGACTGCTCA CTTCGGTCAA GTCTTCGACC
TTCTACATGG GTTTCAATAT GCTCGACCCG GTCATTGGCG GTTTATCGCC AAGGTCGACC
AAGCTGCGGC AGGCCATTTC GATCGCCATC GATCAGGAAG AATATATTTC CATTTTCCAG
AACGGCCGCG GCATTGCGGC GCAGAGTCCG CTGCCGCCGG GGATTTTCGG CTATGAGCCG
GACGAGCAGG GTATCGACAG CACGGTCTAC GACTGGGTCG ACGGCAAGCC GAAGCGCAAA
GCGGTCGAGG TGGCGAAAAA GCTGGTCGCC GAAGCCGGCT ATCCGAATGG CCGCGACGAA
AAGACGGGTG AGCCACTGGT CGTCAATCTT GATACCACCA GTGGCGGGAT GGGGGAAAAG
TCACGCCTCG ACTGGCTGAC CCGGCAGTTC GCCAAAATCG ACGTGCAACT GGTCATCCGC
TCGACCGACT TCAACCGTTT CCAGGACAAG ATTCGCAAAG GCAACGTCCA GCTTTATTAC
CTGGGCTGGA ATGCCGATTA TCCGGACCCG GAGAACTTCT TCTTTCTGCT CGATGGCAAC
GAAGGTAAGG TCGCCAAGGG AGGGGAAAAT GCGTCCAACT ATGCCAATCC GGAATTCGAC
CGTTTGTTTG TTCGTATGAA AAACATGGAC AACACCCCGG AGCGCCTCGG CATCGTCCGC
CAGATGAATC GCATCCTGCA TCACGATGCA CCGTGGGTGT TCGGCCTGCA TCCGAAGAGC
TATACCTTGG GTCATCGCTG GTTGAAAAAC CGCAAGCCGA ATGATGTCGG CAACAATATC
CTGAAATATC AGCGCATTGA TGTTGTCGAT CGGGCTACGG CTCGGCGAGA CTGGAACAGT
CCGGTGTTCT GGCCGCTTGG GCTGGGCTTG CTGGTGCTGG TCATGGCTAT CGTGCCTGCC
GTGATTGGCT ATCGGCGGCG CGAGCGCCGG GCAGCCGTCA AGTGA
|
|---|
| Protein sequence | MGNSHRAGQA LSRAFAKLRA MRKICAGLTV VIALSGCGQA WNDPYPIADA GRNILYTAFT
DRPKHLDPAQ SYTEDEIAFT AQIYEPPLQY HYLKRPYELI PSTVEQVPVL RFFDAAGREL
PHDAPVERIA ESVYELKLKP GIRFQPHPAF AVDANGQPVF GGKNQADGRQ TVGDFPSTGT
RELTADDYIY QIKRLAHPRL HSPIFGMMAD KIVGLKELGE NLQKAAKDKP ADEWLDLDTF
PLAGVEKVDS RTWRIRIKGK YPQFLYWLAM PFFAPVPREA DRFFAQPGMA VKNLTLDWWP
VGTGPYLLSE NDPNRRMVLS RNPNFHGQAY PCEGEPGDRE AGLLNDCGKA LPFIDQAIFN
REKEAIPYWN KFLQGYYDAS GISSDSFDQA VRVNVGGDVA LTDEMRDKGI RLLTSVKSST
FYMGFNMLDP VIGGLSPRST KLRQAISIAI DQEEYISIFQ NGRGIAAQSP LPPGIFGYEP
DEQGIDSTVY DWVDGKPKRK AVEVAKKLVA EAGYPNGRDE KTGEPLVVNL DTTSGGMGEK
SRLDWLTRQF AKIDVQLVIR STDFNRFQDK IRKGNVQLYY LGWNADYPDP ENFFFLLDGN
EGKVAKGGEN ASNYANPEFD RLFVRMKNMD NTPERLGIVR QMNRILHHDA PWVFGLHPKS
YTLGHRWLKN RKPNDVGNNI LKYQRIDVVD RATARRDWNS PVFWPLGLGL LVLVMAIVPA
VIGYRRRERR AAVK
|
|---|
| |