Gene Daro_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_0004 
Symbol 
ID3570028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp5514 
End bp5963 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content60% 
IMG OID637678433 
Producthistidine triad (HIT) protein 
Protein accessionYP_283233 
Protein GI71905646 
COG category[F] Nucleotide transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones65 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0275782 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAAAT TCGTTGATAC CTCGCCACCC GGCCAATGTA TTTTCTGTCG CCTGATTGCC 
GGCGAAATCC CTGCTGCCAA GGTTTATGAG GATGAGCAGA CTCTGGCCTT CATGGACCTC
GGTCAGGTCA ATCCCGGCCA TACGCTGGTC ACCGTCAAGC GCCACGCCGC GACCTTGCTC
GATCTGACGC CGGACGAAGC GGCAGCAGCG ATGCGTACCG CCCAACGGGT GGCGCAGGCG
GTCAAGGATA GCTTTGATCC ACCCGGACTG ACTTTGCTGC AGGCCAATGG CAAGGAAGGC
GACCAGACTG TTTTCCACTT TCACCTGCAC GTCGTTCCAC GCCATGGTGA TGATGGTATT
GCCCTGTCCT GGCCACGCAA GGATCCGTCG CGCGAAACGC TGGAGGGCTA TGCCTTGCGT
CTGCGTCAGG CCATGCTGAC GGTCGGCTGA
 
Protein sequence
MPKFVDTSPP GQCIFCRLIA GEIPAAKVYE DEQTLAFMDL GQVNPGHTLV TVKRHAATLL 
DLTPDEAAAA MRTAQRVAQA VKDSFDPPGL TLLQANGKEG DQTVFHFHLH VVPRHGDDGI
ALSWPRKDPS RETLEGYALR LRQAMLTVG