23 homologs were found in PanDaTox collection
for query gene Daci_R0075 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010002  Daci_R0075  SRP RNA; RNA component of signal recognition particle  100 
 
 		 101 bp  200  5e-50  Delftia acidovorans SPH-1  Bacteria  normal  0.643834  normal  1 
 
 
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NC_008752  Aave_R0034  SRP RNA; RNA component of signal recognition particle  94.06 
 
 		 101 bp  153  1e-35  Acidovorax citrulli AAC00-1  Bacteria  normal  0.052993  normal  0.0100088 
 
 
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NC_011992  Dtpsy_R0029  SRP RNA; RNA component of signal recognitionparti cle  93 
 
 		 101 bp  143  9e-33  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
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NC_008782  Ajs_R0030  SRP RNA  93 
 
 		 101 bp  143  9e-33  Acidovorax sp. JS42  Bacteria  normal  0.794672  normal  0.947694 
 
 
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NC_007908  Rfer_R0009  SRP RNA; RNA component of signal recognition particle  91.58 
 
 		 102 bp  125  2e-27  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
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NC_007948  Bpro_R0028  SRP RNA; RNA component of signal recognition particle  88.89 
 
 		 102 bp  109  1e-22  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
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NC_008781  Pnap_R0025  SRP RNA  88.89 
 
 		 102 bp  109  1e-22  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.00341222  normal  0.445968 
 
 
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NC_008786  Veis_R0002  SRP RNA  89.47 
 
 		 101 bp  101  3e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.467787  normal  1 
 
 
-
 
NC_012791  Vapar_R0019  SRP RNA; RNA component of signal recognitionparti cle  93.65 
 
 		 102 bp  93.7  8e-18  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
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NC_010524  Lcho_R0047  SRP RNA; RNA component of signal recognition particle  90.91 
 
 		 104 bp  83.8  0.000000000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20206 
 
 
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NC_007347  Reut_AR0024  SRP RNA; RNA component of signal recognition particle  84.38 
 
 		 105 bp  65.9  0.000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.255506  n/a   
 
 
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NC_012856  Rpic12D_R0020  SRP RNA; RNA component of signal recognitionparti cle  87.93 
 
 		 104 bp  60  0.0000001  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.330049 
 
 
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NC_010622  Bphy_R0002    87.93 
 
 		 103 bp  60  0.0000001  Burkholderia phymatum STM815  Bacteria  normal  0.180442  normal  0.539085 
 
 
-
 
NC_009080  BMA10247_3560  signal recognition particle RNA  87.93 
 
 		 102 bp  60  0.0000001  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
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NC_007973  Rmet_R0026  SRP RNA; RNA component of signal recognition particle  87.93 
 
 		 104 bp  60  0.0000001  Cupriavidus metallidurans CH34  Bacteria  normal  0.283025  normal  0.297778 
 
 
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NC_008542  Bcen2424_R0046  SRP RNA  86.21 
 
 		 103 bp  52  0.00003  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00820406  n/a   
 
 
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NC_010508  Bcenmc03_R0048    86.21 
 
 		 103 bp  52  0.00003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0344887  normal  0.132073 
 
 
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NC_008390  Bamb_R0048  SRP RNA; RNA component of signal recognition particle  86.21 
 
 		 105 bp  52  0.00003  Burkholderia ambifaria AMMD  Bacteria  normal  0.267779  n/a   
 
 
-
 
NC_010551  BamMC406_R0048    86.21 
 
 		 103 bp  52  0.00003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0963367  normal  0.0663879 
 
 
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NC_008062  Bcen_R0102  SRP RNA; RNA component of signal recognition particle  86.21 
 
 		 103 bp  52  0.00003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0105096  n/a   
 
 
-
 
NC_007510  Bcep18194_AR0056  SRP RNA; RNA component of signal recognition particle  86.21 
 
 		 103 bp  52  0.00003  Burkholderia sp. 383  Bacteria  normal  0.0102004  normal  0.775524 
 
 
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NC_007951  Bxe_AR0037  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 103 bp  46.1  0.002  Burkholderia xenovorans LB400  Bacteria  normal  0.0480154  normal  0.14227 
 
 
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NC_010084  Bmul_R0038  SRP RNA; RNA component of signal recognition particle  84.48 
 
 		 103 bp  44.1  0.006  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0368326  normal  0.266058 
 
 
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