| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5510 |
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| Symbol | |
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| ID | 5751130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 6114891 |
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| End bp | 6119063 |
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| Gene Length | 4173 bp |
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| Protein Length | 1390 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641300643 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001566524 |
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| Protein GI | 160900942 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.162905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.931179 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAGG CACTTAAACA TCTGATTGAA ACGGCCCAAT ATCCAGACAA GTGCGCCGCA
GCACGGCGGG CCTTGTCCTG GACTTCCAGG CGCATCCTTG CCTGGGCGTT TGCCCTGCTG
GGCCTGGCAG TCCTGCAGGC ACATGCAAGC GAGTATCCGT ACATCAAGTG GCCCAACGGT
GAATATCGGG AGGTCAACAC CGATCTGCAG GTCAAGGTAC TGGGCGGTAG CATCGACATC
GCCCGCACCT GGACACTCGG GCGTTGGTGG CTCAACCCCG CATGGGCTCC GCTGGACTTC
GAGCTTGATC CATTGGGCAG GGATGCCAAG ACCATCCAGC GCGCAGGCAC GCTATATGAA
AGAAGCGGCC AGTCGGGCCT ATTCATCGCC AAGGACAGGG TGAATGCGCC CACTTTCATC
CGGCAGGTGA ATCGCCCTGG CCAGGATGGC TGGCAGTGGT ATGACCGCCG CGGCAACACC
ATCGACTATG ACGCGCAGGG GCGCATTCAG GGTTATACGG ACTTCAATGG CATTCAGGTC
CGGTTCAGTT ACGACAGCGC TTCCAGCATC CGCATTCTTG ACCACCATGG GCAGTTGGCT
TTGCGGCTCA ACCTGGCCGA CGGCATTGTC ACTAGCATCG AGGACCGATC AGGCAATATC
GTGCGCTACA CCTGGGCGGG ATCTGGGATC ACCAGGCGAC TGACTGAAGT ATTGGATACC
AGGGGCAACC GATGGACGTA CACCTATGAC GGCAACGGCC AACTCACCAG CCGCACGGAC
CCGCTGGGGG GCAAGATCAC GGCCCAGTAC AGCGCCAGTG CGCCGGCGCC CGCCGCCCAG
TTCACGCTAG GCAACCTGGG CATCACCCTT GATCCCACGG GAACCAGTGG CACCACCCGG
AAACTGCAGA CCAACTGGGG AGGCGGGCGT GTCGGCAGCT TCAGTGACCG CCAGGGCACC
ACAACGGGCT CGGTGCAATA CCTCAGGGAA TCACGAAAAT TCATTGCCAC GCTGACCGAT
CCTCGTGGCA ATCGCTTGGT GGTCCACTAT GACAAGGACG GCCTGGAGTC GGGTCGCACC
CTCAATGACA AAACCATTCG GCAAAGAAGC TGGGATGGCA ACTACACAGA CAGGCTGGTG
GACGAGCGCG GCAACACCCG CACCACCTAT TGGGACTACA ACCGGCGCCC GCTGAGGATT
CGCCATGCTG ATGGCAGCGA GGAAAGCTAC ACCTACGATC CCGTGCATGG CGAAACCACC
AGCCATACCA ATGAACTGGG AATCGTCACC GCCTGGCGGC ATGACAGCAA GGGGCGGGCG
GTACAGCGCA TCGAAGCCCA GGGAACTTCG TTGGAGCGCA TCACGGCATG GGAGTACGAC
GAGCTGGGGC AAATCGTCCG GCAGACCCTG GGCACAGGCG CCCAGGCCAG CGTCACCACC
TATGCCTATG ACGGCAACGG CAATCGCAAA ACGGCCACGG ACGCGGAAGG CGGCGTATGG
AGCTACACGC ATACCGTCAC CGGGCAGATT GCGAGCATCA CCAATCCGCT GGGCCACACC
ACACGCCATG AATACGACAG CCATGGCAAT CGCATCAAGA CCATCTATCC CTCGGGCCTG
ACATCCTCGG CGCGCTTCGA TGCGCTAGGC AACGAAACCC AGAGCATGGA TGGCGAGGGC
CATGCCACCG TCGCTACCTA TGACAGCCAA AGCCGCCTGG TCACGGCCAC CAACGCGCTG
GGCTACGTCT ACCGCTATGA GTACAACGCC TATGGCGACA TCGTTTCGCA GACCACGCCC
ACGGGTAACC GCCATGAACT GGGCTATGAC ATGCTGGGCC GTGTCGCCAG CTACAAGAAC
CCTGCAGGCG ACAGCTCCCA GTACGAATAC GGAGCGCTGG GTACCCCCCA GGCCAACCTG
CTGCAAGCCA TCAACTACCC AGGCGGCCTT GCTGAGTTGG GCCAGTATGA CCAGCGGGGG
CGGCGCACCT CCACCATCCG CAAGTCACGC GATGGTGAAA GCCTGACCCT GCACTACAGC
CTTGACAGCG CAGGACAGAC CGCCGCCATC ACCAGCCCGG GCGGCAAGAC CACCATTTAC
GAGTACGACG CACTGGGCCG CGTCTCCAAA TCCATCGACG CGAGCGGCCA TGCCACCCAG
ATGGCCTACA ACCTGCTGCA CCAGATCACC CGCGTCACTG ATGCCAACGG CAACGTGCAT
ACCCGGCAAT ATGACCGGCT GGGCCGCCTG ACCGAGGAAA TGCGCCCGGA AGGTGGCAAG
ACCACCTATG CATACGATGC CGCGGGCTTT CTGGTCAAGA AAACCAACGC GGCAGGGGAT
GTCAGCAGCT ACACCTACAA CAGCGATGGA CTGCTGACCC TGCTCACCCG CACCAGCCCA
CAGGCCGGGA AACCGGGCTG GAGCAGCAGC ATCACCTACC GCTATGACAA GGCTGGCCGC
CTTGCCGGCT ACGAACAAAA GGATGGCAGT GGCAAGCTCA TCAGCCAGGC CGACTACAGC
CGTGACGCCC TGGGCCGCAT CAGCCAGGAG CAATTGATCT ACGGCGACGG CGCCAACCGC
ATCACCGCCA CCCTGGCCCA GGGTTGGGAT GCCGATGGCC GCAAAACCAG CCAGGGTTAC
CCTGACAGCA GCGCCGCTGC CTTCAGCTAT GCCAAGGGCC ACCTGAAAGA GGCCACCCAG
CCCGGCAGCA CCGACAAGAT CACATGGGCT GACTACCAGT GGATGCTGCC CACCAAGGTC
CAGTACCCTG GCGCCAGCAG AAGCATCGCC TACGACGGCT TCTACAGAAT CCAGGGCATC
CAGGTCCAGG GAGCTTCCAA CGCCAACCTC CTGACGCTGG GCTATCAATA CGACGTCGAG
AGCAGCATCA CACGCAAGAC GCTGCAATTG GGCAGCGATG TCAACGGCAG CGTTGACTAC
GCGTATGACG CACTGGACCG CCTGACCCAG GTTCGCCCCA GCACCAGCCT GACCGAACTG
GGCCTGCCCC AGGAACAATA CGGCTACGAC GCCGTGCACA ACCGCACCAG CAGCCTGCAC
CAGCCCGGCG AATGGCAATA CGCCAGCGGC AACCGGCTGG TCCAGCGGGG CCTTGGCGCG
GACCAGGTGC GCTATGACTA CAGCGCCACT GGCCATATCC AGAGCGCCAC ACGCAATGGC
AGCATCACCA CCAACCTCTA TGACGCGGCA GAGCGCCGGG TGGCTGTGGA GCAGGATGGG
CAGGTCACGG CACGCTACCA GTACGACCCG TTTGGGCGGC GTATCAGCAA GACGCTGGGG
ACGGGGCAGG GCGCGCAGAC GACCTGGTTT ATTTACAGCG GCGAAGGACT GCTGGCAGAA
GTAGAGGCGC TAGGAAAAAC GATTAAATCC TATGGCTGGC AGCCTGATGC GGACTGGGGT
ACGGAACCCC TATGGCAGGC GGATCACATC AACGGTCAGA CGGGTACCAG TACCAGGATT
TATCATTATC TGCACAGTGA CCATTTAAGT ACCCCGCAGG TGGCCAGCGA CGCGGCAGGC
CGCTCTTCGT GGCAGGCCTT GAACGAGAGC TTTGGGCAAA CACTGGAGCG TAGCGGTAAC
CGCACGCGGA TGAATTTGCG GTTTGCGGGT CAGTATTTTG ATGAAGAGAC GGGAACGCAT
TACAACTATC AACGCGACTA CAGTCCGGGG GTGGGTAGAT ATTTGCAAAC AGACCCAATC
GGAATAGACG GTGGAGTCAA TGTCTTTGTC TATGCAGAGG AGAATCCTGT AAAACTGAAT
GACCCGACTG GGCAGCAAGC AGTTTTGCCT GGGCCTGGAG GTATACCTAT TCCAATTCCG
GGTCCTACAC CTGGAGGGCC TCGACCTACG CCAATTGATC CAACAGATCC GCGTGGACCT
ACTTATGGCC CAAATCCTAT AAATTTTCCT ATAGTGTTTC CTCCATTGGT TGGGCCTATG
CTTGGGGGTA TTATGGATTT GTGCATGGAA AGTCGTGGAC GCGGAGAGCG TGGTGCAACT
GGGGGTTCTT CTGGTCAGAA TTCAAAAAAT CCTTATAAGC ACTGTCGAGA TCATCCAAGC
GACCCTAATA AAATTGAATG CAAGGATCAC CAAACTGGAA AATGGATACC AAAACCAAAA
CCTCCCAATT GGGGTGAGAT TAAAGGTAAT TGA
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| Protein sequence | MTQALKHLIE TAQYPDKCAA ARRALSWTSR RILAWAFALL GLAVLQAHAS EYPYIKWPNG
EYREVNTDLQ VKVLGGSIDI ARTWTLGRWW LNPAWAPLDF ELDPLGRDAK TIQRAGTLYE
RSGQSGLFIA KDRVNAPTFI RQVNRPGQDG WQWYDRRGNT IDYDAQGRIQ GYTDFNGIQV
RFSYDSASSI RILDHHGQLA LRLNLADGIV TSIEDRSGNI VRYTWAGSGI TRRLTEVLDT
RGNRWTYTYD GNGQLTSRTD PLGGKITAQY SASAPAPAAQ FTLGNLGITL DPTGTSGTTR
KLQTNWGGGR VGSFSDRQGT TTGSVQYLRE SRKFIATLTD PRGNRLVVHY DKDGLESGRT
LNDKTIRQRS WDGNYTDRLV DERGNTRTTY WDYNRRPLRI RHADGSEESY TYDPVHGETT
SHTNELGIVT AWRHDSKGRA VQRIEAQGTS LERITAWEYD ELGQIVRQTL GTGAQASVTT
YAYDGNGNRK TATDAEGGVW SYTHTVTGQI ASITNPLGHT TRHEYDSHGN RIKTIYPSGL
TSSARFDALG NETQSMDGEG HATVATYDSQ SRLVTATNAL GYVYRYEYNA YGDIVSQTTP
TGNRHELGYD MLGRVASYKN PAGDSSQYEY GALGTPQANL LQAINYPGGL AELGQYDQRG
RRTSTIRKSR DGESLTLHYS LDSAGQTAAI TSPGGKTTIY EYDALGRVSK SIDASGHATQ
MAYNLLHQIT RVTDANGNVH TRQYDRLGRL TEEMRPEGGK TTYAYDAAGF LVKKTNAAGD
VSSYTYNSDG LLTLLTRTSP QAGKPGWSSS ITYRYDKAGR LAGYEQKDGS GKLISQADYS
RDALGRISQE QLIYGDGANR ITATLAQGWD ADGRKTSQGY PDSSAAAFSY AKGHLKEATQ
PGSTDKITWA DYQWMLPTKV QYPGASRSIA YDGFYRIQGI QVQGASNANL LTLGYQYDVE
SSITRKTLQL GSDVNGSVDY AYDALDRLTQ VRPSTSLTEL GLPQEQYGYD AVHNRTSSLH
QPGEWQYASG NRLVQRGLGA DQVRYDYSAT GHIQSATRNG SITTNLYDAA ERRVAVEQDG
QVTARYQYDP FGRRISKTLG TGQGAQTTWF IYSGEGLLAE VEALGKTIKS YGWQPDADWG
TEPLWQADHI NGQTGTSTRI YHYLHSDHLS TPQVASDAAG RSSWQALNES FGQTLERSGN
RTRMNLRFAG QYFDEETGTH YNYQRDYSPG VGRYLQTDPI GIDGGVNVFV YAEENPVKLN
DPTGQQAVLP GPGGIPIPIP GPTPGGPRPT PIDPTDPRGP TYGPNPINFP IVFPPLVGPM
LGGIMDLCME SRGRGERGAT GGSSGQNSKN PYKHCRDHPS DPNKIECKDH QTGKWIPKPK
PPNWGEIKGN
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