| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4963 |
|---|
| Symbol | |
|---|
| ID | 5750574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5493675 |
|---|
| End bp | 5496107 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641300087 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001565977 |
|---|
| Protein GI | 160900395 |
|---|
| COG category | [C] Energy production and conversion
[K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins
[COG2421] Predicted acetamidase/formamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.559194 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACG ATCCAAGACG CTTTTCCACC CACGCATTTC CCGATGCCTT GCGGCAGGCT
GCGCTCAATG AGGCGCTGTC CAGGGCAGAC ATCCATGGCG AAGCGCCCAC GCCGCCGGCC
ACCCACCTGG CGCTGCGCAG CTCGCCACTG GGATCGGTGT TCATCACGCT GGCCACCTCG
CCGCTGACGC TGCGGGCCGT GGCCAAGCGG CTGCGCGGCC CGGGCCTGCT GCTGTGCGCC
TTGCTGCAAG GCAGCGCCAA TGCGGTGATT GAGGACGCCG CATTCCCGCT CAAGGCCGGC
TCGGCCTTGC TGCTGGAGTC AGACCGGGAC TGGCAGCTGC AGTTGCCCGG CGACGGCCGC
CTGCTGCTTG CGCGGCTGGA GTCCTCGAGC TTTCTGCTGC GCCTGCTGCG CTCGTGCCCG
CCCGAGGCCA GGCACATCGG CGGGACAGGC GGCGTGGGGG CCATGTGCAT GGCAATGGCG
GCCTCACTGG CAGAGCAGAT CGACACACTG GCACAGGACG ATCTGCTGTC GGTGGAGGCC
ACGCTCACCG ACATGCTGGT CACCTGCCTG ACACCGCGCG CCGGCAATCC CGATCAGGAA
CAGGCCGAGG CGACCGAGCC GCCCAGCGCC GTACAGCTTG GCCATCTGCG CCGCATCTGC
CGCGCCATCG AAACCCGGCT GGGCGATGCC GAGCTGTCCA TCGATGCCAT CGCCGACGCC
GAGGGGCTGT CCACGCGCTA TCTGCAAAAG CTGTTCAAGG GGGCTGCCAC CAGCTTCAGC
ACCTACCTGC GCGAACGCCG GCTGGAGCGC TGCCGCATGG ACCTGAGCAA CCGCTCGCTG
CAGCATTTCT CCATTGCCGA GCTGTGCTTT CGCTGGGGCT TTGGCGATGC CGCCAACTTC
AGCCGAGCCT TCACGGCCCG CTATGGTCTG TCCCCCAAGG CCTATCGCGC CAGTCCGGCG
CGTGTGCAGG ATGCGCCGCC CGGCCAGCGC GGACGCCCCT CGCCCGCAGA GAGCGCTGCG
CAGGGTGCAG AACCGGCCGC AGCGCGCCTG GCACACAGCC CGTTCCAGGC CCTGCTGCGC
GACCATGCAC GCTACGCCCA GGCGCTGGCC CTTGTGCCCA AGCGCTCGGC GCACGCAGAC
AATGGCGGTG CGTCGCCCCA GCATTACTAC CTTCCGGTCT CCGACAAGAC CGTGCACTGG
GGCTACCTGA GCCGTTCACT CAAGCCCGTG CTTTCCGTGC GCTCGGGTGA CGTGGTGACC
ATGGAGACGC TGACCCAGCA TGCCTCGGAC GACTGGGAAC GCATGATCGA AGGCGATCCG
GGCGCCGAAA GCGTGTTCCA CTGGACCGCG GCCCAGAAGG CCGTGGACCG GCGCGGCGCG
GGCCCGATGG ACGCCTCGAT CTACGGCCGC GGCGCGGGCG AGGGCTTCGG CGTGCACATC
TGCACCGGCC CCGTCTATGT GCATGAGGCC GAACCCGGCG ACCTGCTGGA GATACGCATC
CTCGATGTGC AGCCACGCCC CAGCTGCAGC CCCGCCCACC ACGGCCGTGT CTTCGGCAGC
AACGCCGCCG CCTGGTGGGG CTTTCACTAC CGCGACCAGA TCACGGAGCC CCGCCAGCGC
GAAGTGGTCA CCATCTACGA AATCGACCAC GCACTGCCCG AGGAGCCCAC GGCCCGCGCT
GTCTACAACT ACCGCTGGAC ACCGCAGACC GACCCCTTCG GCGTGGTCCA TCCGACCATC
GACTACCCGG GCGTGCCCGT GGACCCCGCC ACCATCACCC GGCGCTTTGG TGTGCTGGAC
AAGGCACGCG TGCCGCTGCG TCCGCATTTC GGCATGCTGG CCGTGGCACC GCGAGAGGCC
GGCCTGATCG ACTCCATACC GCCGAGCTAC TTCGGCGGCA ACCTGGACAA TTGGCGCGCC
GGCAAGGGCG CGACGCTCTT CCTGCCCGTA TCGGTGCCAG GCGCGCTGTT TTCGGTGGGA
GACCCGCATG CATCCCAAGG CGACTCGGAA CTGTGCGGCA CGGCCATCGA ATGCTCGCTG
ACCGGCAGCT TCGAGCTGCG GGTGCACAAG CGCGCCGCGC TGGACAACCG CTTCCTTGCA
GAGCTGGACC ACCCTTTCCT GGAGACCGGC TCCGAGTGGG TGATACAGGG CTTCAGCTTC
ACCGACCACC TGGCCGAACT GGGCAGCCAG GCGCAGTCCC AGGTCTATCG CAAGTCATCG
CTGGAAGGCG CCATGCGTGA CGCCTTCCAC AAGGCAAGGC GCTATCTGAT GCTGGCCCAC
GGGCTGGACG AGGACGAGGC CGTATCGCTG ATCTCCGTGG CCGTGGACTT CGCCGTGACG
CAGGTGGTGG ACGGCAACTG GGGCGTGCAC GCCGTGATCA AGAAGGCGCT GTTTCCGCCG
GAACTCTCGG CGTCCGCCCA GGCGGGCCCA TGA
|
|---|
| Protein sequence | MHDDPRRFST HAFPDALRQA ALNEALSRAD IHGEAPTPPA THLALRSSPL GSVFITLATS
PLTLRAVAKR LRGPGLLLCA LLQGSANAVI EDAAFPLKAG SALLLESDRD WQLQLPGDGR
LLLARLESSS FLLRLLRSCP PEARHIGGTG GVGAMCMAMA ASLAEQIDTL AQDDLLSVEA
TLTDMLVTCL TPRAGNPDQE QAEATEPPSA VQLGHLRRIC RAIETRLGDA ELSIDAIADA
EGLSTRYLQK LFKGAATSFS TYLRERRLER CRMDLSNRSL QHFSIAELCF RWGFGDAANF
SRAFTARYGL SPKAYRASPA RVQDAPPGQR GRPSPAESAA QGAEPAAARL AHSPFQALLR
DHARYAQALA LVPKRSAHAD NGGASPQHYY LPVSDKTVHW GYLSRSLKPV LSVRSGDVVT
METLTQHASD DWERMIEGDP GAESVFHWTA AQKAVDRRGA GPMDASIYGR GAGEGFGVHI
CTGPVYVHEA EPGDLLEIRI LDVQPRPSCS PAHHGRVFGS NAAAWWGFHY RDQITEPRQR
EVVTIYEIDH ALPEEPTARA VYNYRWTPQT DPFGVVHPTI DYPGVPVDPA TITRRFGVLD
KARVPLRPHF GMLAVAPREA GLIDSIPPSY FGGNLDNWRA GKGATLFLPV SVPGALFSVG
DPHASQGDSE LCGTAIECSL TGSFELRVHK RAALDNRFLA ELDHPFLETG SEWVIQGFSF
TDHLAELGSQ AQSQVYRKSS LEGAMRDAFH KARRYLMLAH GLDEDEAVSL ISVAVDFAVT
QVVDGNWGVH AVIKKALFPP ELSASAQAGP
|
|---|
| |