| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4400 |
|---|
| Symbol | |
|---|
| ID | 5749988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4816760 |
|---|
| End bp | 4817695 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641299503 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001565416 |
|---|
| Protein GI | 160899834 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCG TTCTCTATGA CCTGGATGTG CTGCGCACTT TTTGCACCGG CGTCGAACTG
GGCAGCTTTG CCCGGGCGGC GGACCGGCTG GGCCGCTCCA CATCGGCCGT CAGTGCCCAG
CTCAAGAAGC TGGAGTCCCA ATGCGGCACG CCCTTGCTGC GCAAGTCCGG CCGGGGGCTG
GTGCTGACGG AGGCGGGGGA AACCTTGCGC GGCTACGCGC TGCGCCTGCT GGAGCTCAAC
GACCGCGCCG TGGCGGCCGT GCGCGGCAGC GAGCTGCGCG GCCTGGTGCG CCTGGGCCTG
CAGGAAGACC TGGGCGAAAG CGTGCTGCCC CATGTGCTGG GGCAGTTCGC GCGGGCCCAC
CCGCATGTGC GCATCGAGGC CAGCGTGGCC CGCAGCGATG AACTGCGCGA ACGCATGGCC
CTGGGCCAGT TCGACCTGGC GCTGCTCTGG GATGTGGGCA TGAACCATGC CTGCGTGCAT
GGCGAGCACA TCATGCGGCT GCCGCTTCAG TGGATTGGCC CGGCATCGCT GGATGCGGCC
GAAGCCGGCT GGGCGCGCGG CCTCAACGGC GGGGCGCAGG GCGATGAGGC GCTGCCCCTG
GCCATGCTTG AGGCGCCTTG CCCCCTGCGG GACATCGTGA CGGCCGCCCT GGACAAAAAG
GGCCTGGCCT GGCGGCACGC CTTCAACAGC GCCAGCCTGA CCGCCGTCTG GGCCGCCACG
GCGGCCGGCC TGGGCCTGTC CGTGCGCACG CCGTTCGGCC TGCCCGCCCA CGTCAGGCCG
CTGGATGCGC AGGCCCTTGG CCTGCCGGCC CTGCCGTCCA TGGACCTGAT CCTGGGCCGC
GCCGCGCTGG ATGCCCCGGA GCCCGTGGAC CGCCTTGCGC GCATCCTGGT CGATGCAGTG
CGCGAGCATG TGCGCAGGCA GGAAATCGCA ATTTGA
|
|---|
| Protein sequence | MTRVLYDLDV LRTFCTGVEL GSFARAADRL GRSTSAVSAQ LKKLESQCGT PLLRKSGRGL
VLTEAGETLR GYALRLLELN DRAVAAVRGS ELRGLVRLGL QEDLGESVLP HVLGQFARAH
PHVRIEASVA RSDELRERMA LGQFDLALLW DVGMNHACVH GEHIMRLPLQ WIGPASLDAA
EAGWARGLNG GAQGDEALPL AMLEAPCPLR DIVTAALDKK GLAWRHAFNS ASLTAVWAAT
AAGLGLSVRT PFGLPAHVRP LDAQALGLPA LPSMDLILGR AALDAPEPVD RLARILVDAV
REHVRRQEIA I
|
|---|
| |