| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3958 |
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| Symbol | |
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| ID | 5749541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4358748 |
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| End bp | 4360223 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641299056 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001564974 |
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| Protein GI | 160899392 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.753849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.338977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTGC TTCGGCCCCT TGCCCCTGTC GCTTCCGCCC TGACCCGCCC ATACGCCTGG
CCCCTGCGCC ACATGGCCTT GCTGCTGTGC GCGGCCGGCA TGGGCTCGGC CCTGGCACAG
GCTCCTGCCC CAGCCGTCCT TGCGCCCGCC CCTGCGGCCC CGCAGTCTGC CCTGCCCTCT
CTGACAGCAT CTGCGCCCAC GGGCCAGAAC CTGTCCGAAC TGGTGGCCAA GGCCCGCGGC
TACGACGCCC AGTGGCAGGC CCAGCAGGCC GACGCCCAGG CCGCCGCCAG CCGCGCCGAG
CAGGCACGCT CGGGCCTGTT GCCCAGCGTG GGTCTGCAGG CCGGTGCCAA CACCTCGCAT
GTGGAAGTCA GCGTGCTGCC GGGGAGCTTT CGCTCGCCCC AGCAGAACCT GCAGCTCAGC
GCCCAGCAGC CGCTGTACCG CCCGGCCAAC AAGATCGCCT ACGACCAGGG CCAGCGCGGC
GTGGACGTGG CGCGTGCCCA GTTGGACAGC GGCGAGCAGA ACCTGCTGGT TCGCGTGGCC
CAGGCCTACT TCGATGTCCT CGGCGCCCAG GACAGCCTGG CCGTGGTCAA GGCACAGAAG
GCAGCCATTG CTCAGCAGCT GGAATTTGCC AAGCGCAACT TCGAGGTCGG CACGGCCACC
ATCACCGACT CGCGCGAAGC CCAGGCGCGG TTCGACCTGG CCGGCGCGCA GGAAATCGCC
GCCGAGAACG ACCTGCGCGT CAAGCGCCTG GTTCTGGACC AGATCGTTGG CGCCGTGGGC
ACCGTGCCCC GCCCCCTGGC CCAGCCGCTG CAGTTGCCGG CCCTGATGCC CGCCGATGCC
CAGGCCTGGG TGGACACCGC ACTGCAAGGC CAGCCCCAGC TGCGCCAGGC CCGCCTGGCG
CTGGACATTG CCCAGCTGGA AACGAAGAAA GCCGAGGCCG GCCACAAGCC CACCGTGGAC
CTGCAGGCCG GCTACGTGGT CAACCGCTAT CCCAATGGCT CGGTCACACC GCAGATCGGC
ACCAGCTACC GCACCAATGC CGCCAGCGTG GGCGTGGTCA TGAACCTGCC CCTGTTCGCC
GGCTTTGCCG TGCAAAACCG CATCAAGGAG ACCCTGGCAC TGGAAGACAA GGCGCGCGCG
CAGCTGGACG ACGCCCAGCG CAACGTGGAG CAGAGCACGC GCACGGCCTT CTTCGGCGTG
CAGTCGGGCC AGGCCCAGGT CAAGGCTCTG GAGGCCGCGC TGGCGTCCAG CCAGAGCGCG
CTGGACGCCA ACAAGCTCGG CTACGAGGTC GGCGTGCGCA TCAACATCGA CGTGCTCAAC
GCGCAAAGCC AGCTCTACCA GACCCAGCGC GACCTGGCCC TGGCGCGCTA CCAGGTGCTG
CTGGGCCAGC TCAAGCTGCG CCAGGCCGCC GGCACGCTCA GCGACGACGA CCTGCGCGCC
ATCGATGCGC TGTCGCTCCG CGCGCCAGCC CCTTGA
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| Protein sequence | MPLLRPLAPV ASALTRPYAW PLRHMALLLC AAGMGSALAQ APAPAVLAPA PAAPQSALPS
LTASAPTGQN LSELVAKARG YDAQWQAQQA DAQAAASRAE QARSGLLPSV GLQAGANTSH
VEVSVLPGSF RSPQQNLQLS AQQPLYRPAN KIAYDQGQRG VDVARAQLDS GEQNLLVRVA
QAYFDVLGAQ DSLAVVKAQK AAIAQQLEFA KRNFEVGTAT ITDSREAQAR FDLAGAQEIA
AENDLRVKRL VLDQIVGAVG TVPRPLAQPL QLPALMPADA QAWVDTALQG QPQLRQARLA
LDIAQLETKK AEAGHKPTVD LQAGYVVNRY PNGSVTPQIG TSYRTNAASV GVVMNLPLFA
GFAVQNRIKE TLALEDKARA QLDDAQRNVE QSTRTAFFGV QSGQAQVKAL EAALASSQSA
LDANKLGYEV GVRINIDVLN AQSQLYQTQR DLALARYQVL LGQLKLRQAA GTLSDDDLRA
IDALSLRAPA P
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