| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2679 |
|---|
| Symbol | |
|---|
| ID | 5748255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2948215 |
|---|
| End bp | 2951187 |
|---|
| Gene Length | 2973 bp |
|---|
| Protein Length | 990 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641297774 |
|---|
| Product | transposase Tn3 family protein |
|---|
| Protein accession | YP_001563702 |
|---|
| Protein GI | 160898120 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.669766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGCC GCTCAATCCT GTCCGCCACC GAGCGCGAAA GTCTGCTGGC ACTGCCAGAT
GCCAAAGACG AACTGATACG GCACTACACG TTCAACGAAA CCGACCTGTC GGTGATCCGT
CAGCGTCGCG GCGCCGCGAA TCGATTGGGC TTCGCCGTGC AGCTTTGCTA CTTGCGATTC
CCTGGCATCT TCTTGGGCGT CGATGAACCT CCATTTCCGC CCCTGCTGCG CATGGTGGCC
GCACAACTCA AGGTGCCGGT GGAAAGCTGG AACGATTACG GCCAGCGCGA GCAGACACGG
CGGGAGCACT TGGTCGAGCT GCAAACGGTG TTTGGATTCA AGCCCTTCAC CATGAGTCAC
TACCGGCAAG CCGTGCATAC ACTGACCGAA CTGGCCTTGC AAACAGACAA AGGCATTGTG
CTGGCCAGCA CCCTTGTTGA AAACCTGCGG CGGCAGAGCA TCATCCTACC CGCCATGAAT
GCCATCGAGC GCGCAAGCGC CGAGGCCATT ACCCGTGCCA ACCGGAGCAT CCATGCGGCA
TTGGCCGATT CCTTGATACC TGTCCATCGC CAGCGCCTGG ACGAACTGCT CAAGCGCAAG
GATGGTAGCA AAATGACGTG GCTAGCGTGG CTGCGCCAAT CGCCCGCCAA GCCGAACTCG
CGCCACATGC TTGAACACAT CGAACGCCTC AAAGCCTGGC AGGCGCTTGA CCTACCTGCT
GGCATCGAAC GGCAGGTACA CCAAAACCGC TTGCTCAAGA TCGCCCGCGA GGGCGGCCAG
ATGACGCCCG CCGACCTGGC CAAGTTCGAG TCGCAGCGGC GTTACGCCAC CTTGGTAGCA
CTGGCCATCG AGGGCATGGC CACCGTCACT GATGAAATCA TCGACCTTCA CGACCGCATC
ATCGGCAAGC TGTTCAATGC GGCCAAGAAC AAGCATCAAC AGCAGTTCCA GGCTTCCGGC
AAGGCGATCA ACGACAAGGT GCGGATGTAT GGGCGCATCG GTCAGGCGCT GATTGAAGCC
AAACAAAGCG GCGGCGATCC GTTCGCCGCC ATCGAAGCGG TCATGCCGTG GGACACCTTC
GCCGCCAACG TCACCGAGGC GCAAACGCTG GCGCGGCCTG CCGATTTTGA TTTCCTGCAC
CATATCGGCG AGAGTTACGC CACGCTGCGC CGCTATGCGC CGCAGTTCCT GGACGTGCTC
AAACTGCGCG CCGCGCCCAC CGCCAAGGGT GTGCTCGATG CCATCGACGT GCTGCGCGGC
ATGAACAGCG ACAGCGCGCG CAAGGTGCCC GCCGATGCGC CAACCGCATT CATCAAGCCG
CGCTGGGCAA AGCTGGTTCT GACCGACGAG GGTATTGACC GGCGTTACTA CGAGTTATGC
GCCCTGTCGG AGCTGAAGAA CGCACTGCGC TCTGGTGATG TTTGGGTGCA GGGTTCGCGC
CAGTTCAAGG ACTTCGACGA ATACCTGGTG CCGATCGAGA AGTTCGCCAC CCTGAAGCTG
GCCAGCGAAT TGCCACTGGC CGTGGCCACC GACTGCGACC AATATCTGCA TGACCGACTG
GAATTATTGG AGGCGCAACT CGCCACAGTC AACCGCATGG CGGCGACCAA CGACTTACCG
GATGCCATCA TCACCACTGC ATCGGGCCTG AAGATCACGC CGCTGGACGC AGCGGTGCCA
GACGCCGCGC AAGCCTTGAT TGACCAGTCG GCGATGTTGC TGCCGCACCT CAAGATCACC
GAGTTGCTGA TGGAGGTCGA TGAATGGACG GGCTTCACGC GCCACTTCAC ACACCTGAAG
ACCGGCGACA CGGCCAAGGA CAAAACCTTG CTGATGACGA CGATTCTGGC TGATGGTATC
AATCTTGGGC TCACCAAGAT GGCCGAGTCC TGCCCTGGCA CCACCTACGC CAAGCTGTCT
TGGCTGCAAG CCTGGCACGT TCGCGACGAA ACCTATTCGA CGGCGCTGGC CGAGCTGGTG
AACGCACAGT TTCGACAACC CTTCGCCGGA AACTGGGGCG ACGGCACCAC GTCATCGTCG
GACGGCCAGA ACTTCCGAAC CGGCAGCAAG GCAGAGAGCA CCGGGCATAT CAATCCGAAG
TATGGAAGTA GCCCTGGGCG GACGTTCTAT ACCCATATCT CCGACCAATA CGCGCCCTTC
AGCGCCAAGG TGGTCAACGT CGGCTTGCGC GACTCGACCT ATGTGCTCGA TGGCCTGCTG
TACCACGAGT CTGACTTGCG TATCGAGGAA CACTACACCG ACACGGCGGG CTTCACCGAT
CATGTGTTCG GCCTGATGCA CTTTCTGGGA TTCCGGTTCG CGCCGCGCAT CCGCGACCTG
GGCGACACCA AGCTGTTCAT TCCCAAGGGC GATACTGCCT ACGATGCACT CAAGCCGATG
ATTAGCAGCG ACAGGCTGAA CATCAAGGCT ATTCGCGCTC ATTGGGATGA AATCCTACGG
CTGGCCACTT CGATCAAGCA GGGCACGGTG ACGGCCTCGC TGATGCTGCG CAAGCTCGGC
AGCTATCCGC GCCAAAACGG CTTGGCCGTC GCCCTGCGCG AGCTGGGGCG CATCGAGCGC
ACGCTGTTCA CTCTGGATTG GCTGCAAAGC GTGGAGCTGC GCCGCCGCGT CCATGCGGGG
CTGAATAAGG GCGAGGCGCG CAACGCGCTG GCCAGGGCGG TCTTCTTCTA CCGATTGGGT
GAAATCCGCG ACCGCAGTTT TGAGCAGCAG CGCTACCGGG CCAGCGGCCT CAATCTGGTG
ACGGCGGCCA TCGTGTTGTG GAACACGGTC TATCTGGAGC GTGCCACCAG TGCTTTGCGT
GCCCACGGCA AGGCGCTGGA CGACACGTTG CTGCAATATC TGTCACCGCT GGGGTGGGAG
CATATCAACC TGACCGGCGA TTACCTATGG CGCAGCAGTG CCAAGGTCGG TGCGGGGAAG
TTCAGGCCAT TGCGACCGCT GCCACCGGCT TAG
|
|---|
| Protein sequence | MPRRSILSAT ERESLLALPD AKDELIRHYT FNETDLSVIR QRRGAANRLG FAVQLCYLRF
PGIFLGVDEP PFPPLLRMVA AQLKVPVESW NDYGQREQTR REHLVELQTV FGFKPFTMSH
YRQAVHTLTE LALQTDKGIV LASTLVENLR RQSIILPAMN AIERASAEAI TRANRSIHAA
LADSLIPVHR QRLDELLKRK DGSKMTWLAW LRQSPAKPNS RHMLEHIERL KAWQALDLPA
GIERQVHQNR LLKIAREGGQ MTPADLAKFE SQRRYATLVA LAIEGMATVT DEIIDLHDRI
IGKLFNAAKN KHQQQFQASG KAINDKVRMY GRIGQALIEA KQSGGDPFAA IEAVMPWDTF
AANVTEAQTL ARPADFDFLH HIGESYATLR RYAPQFLDVL KLRAAPTAKG VLDAIDVLRG
MNSDSARKVP ADAPTAFIKP RWAKLVLTDE GIDRRYYELC ALSELKNALR SGDVWVQGSR
QFKDFDEYLV PIEKFATLKL ASELPLAVAT DCDQYLHDRL ELLEAQLATV NRMAATNDLP
DAIITTASGL KITPLDAAVP DAAQALIDQS AMLLPHLKIT ELLMEVDEWT GFTRHFTHLK
TGDTAKDKTL LMTTILADGI NLGLTKMAES CPGTTYAKLS WLQAWHVRDE TYSTALAELV
NAQFRQPFAG NWGDGTTSSS DGQNFRTGSK AESTGHINPK YGSSPGRTFY THISDQYAPF
SAKVVNVGLR DSTYVLDGLL YHESDLRIEE HYTDTAGFTD HVFGLMHFLG FRFAPRIRDL
GDTKLFIPKG DTAYDALKPM ISSDRLNIKA IRAHWDEILR LATSIKQGTV TASLMLRKLG
SYPRQNGLAV ALRELGRIER TLFTLDWLQS VELRRRVHAG LNKGEARNAL ARAVFFYRLG
EIRDRSFEQQ RYRASGLNLV TAAIVLWNTV YLERATSALR AHGKALDDTL LQYLSPLGWE
HINLTGDYLW RSSAKVGAGK FRPLRPLPPA
|
|---|
| |