| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1995 |
|---|
| Symbol | |
|---|
| ID | 5747554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2179693 |
|---|
| End bp | 2181384 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641297075 |
|---|
| Product | cobaltochelatase |
|---|
| Protein accession | YP_001563020 |
|---|
| Protein GI | 160897438 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
|---|
| TIGRFAM ID | [TIGR01651] cobaltochelatase, CobT subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.314181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTG AGGCATCCCC CTCGCTGGCG CACATGGAGG CCTGGGGCGG GGCGCTGCTG
CGCGCCATGG CGGGCGATGC CTCGCTGCAA TGGAGCGGGC AGACGCTATA CCGGGGCACG
GCGCCCGTGG TGCTGGCAGC GGCCCACCAA TCCGATGTGC CGGCCCGATT GGCCGACCAG
CGCGGCCTGC TCGACGGCGC CAGCCTGCGC CTGCGCCTGA GCGATGCCGC GCTGCACGCG
CGCCACCTGC CCGGCGATCC GGTGGAGCGG CTGGTGTTCG AACTGCTGGA GCAGTTGCGC
GTGGAAAGCC TGGCGCCCGA GGAATGGCCC GGCGCACGCG CCAACCTGCA TGCGCGCTTT
GTGCACTGGA GCCAGGCCTT TGCCGATTCG GGCCTGACCG AAAGCAGCCT TGGCATCCTG
CTGTTCACCG TGGCGCTGAC CGCCTGGAGC CGCCTGAGCG GCCATGAGCC GCCCGATGCC
CTGGGCGACC TGGCCGAGGC CACGCGCGCC GGCCTGTCCG CGCAACTGGG CGCGCAGTGG
GCCCTGCTGC GCCGCCACCG GCAGGACCAG CAGGCCTTCA TTGCGCCGGC CCTGGCCATC
AGCCGCTGGG TGGGCCAGGC CGTGCGGTCA GCCCAGGAAG AGGCGCCGCG TGGCGCTGCC
GGGCCGCGCC GGCGGGGCAG CTTCGCGCTG CCGCTGCACT TTGAATCGCA AAGCCTGGAT
GCGCCGCCCG TGGCGCTCAG CGGCGACAGC CGTGCCTGGG CCGGCTCGGC CCACAGCTAC
CGCGTGTTCA CGCGCGCCTA TGACCGCGAG GCGCAGGCGG CCGAGCTGAT CCGCGCAGCG
CAACTGGCCG AGTTCCGCGG GCAGATGGAT GAGGAACTGG CGCGCAGCGG CTTGCACGCG
GGCCGGCTGG CCCGCCACCT GCAGCAGCGC CTGGCCGTGC CGCGCCACGA CGGCTGGCAG
TTCGGCCTGG AGGATGGACA CCTGGATGCA AGCCGGCTGG CGCAACTGGT CAGCGATCCG
CAGCAGCGCG CCATCTTCAG GAACGAGCTG CCGCACCCCG TCAGCGATGC GGCCGTGGCC
CTCCTGCTGG ACTGCTCGGG CTCGATGAAG GCGCATGCGC GCCCGCTGTC CCTGCTGGTG
GACCTGCTGG GCCGCGCGCT GTCCATGGCC GGCGTGCCGG TGGACGTGCT GGGCTTTTCC
ACCCAGGCCT GGAACGGCGG CCGCGCCCGC CGCGACTGGC AGCGCGCGGG CCAGCCCCAC
ATCCCGGGCC GGCTCAACGA GCGGCTGCAC ATCGTCTTCA AGGACGCCGC CAAACCCTGG
CGCCACGCCC GCCACGGCAT TGCCGCGCTG CGCAGGCCCG ACCTCTTTCG CGAGGGCGTG
GACGGCGAGG CCGTGCAATG GGCCTGCGAG CGGCTGCTGG CGCGGCCCGC GCAGCGCCGC
ATCCTGCTCG TCATCTCGGA CGGCTGCCCC ATGGACACGG CCACGCACCA GGCCAACGAC
GAGCACTACC TGGACCAGCA CCTGCGCCAG GTCATCGCCC GGCACGAGCG CGCGGGCGAC
GTGCAGATCC GCGCGCTGGG CGTGGGGCTG GACCTGGGCG TGTTCTACCG GCGCAGGCTG
GCGGTGGACC TGCGCGAGCA GATCGATGAA GCCCTGCTGA TGGACGTGGC GGAGTTGATC
TGCCGGCGGT GA
|
|---|
| Protein sequence | MPAEASPSLA HMEAWGGALL RAMAGDASLQ WSGQTLYRGT APVVLAAAHQ SDVPARLADQ
RGLLDGASLR LRLSDAALHA RHLPGDPVER LVFELLEQLR VESLAPEEWP GARANLHARF
VHWSQAFADS GLTESSLGIL LFTVALTAWS RLSGHEPPDA LGDLAEATRA GLSAQLGAQW
ALLRRHRQDQ QAFIAPALAI SRWVGQAVRS AQEEAPRGAA GPRRRGSFAL PLHFESQSLD
APPVALSGDS RAWAGSAHSY RVFTRAYDRE AQAAELIRAA QLAEFRGQMD EELARSGLHA
GRLARHLQQR LAVPRHDGWQ FGLEDGHLDA SRLAQLVSDP QQRAIFRNEL PHPVSDAAVA
LLLDCSGSMK AHARPLSLLV DLLGRALSMA GVPVDVLGFS TQAWNGGRAR RDWQRAGQPH
IPGRLNERLH IVFKDAAKPW RHARHGIAAL RRPDLFREGV DGEAVQWACE RLLARPAQRR
ILLVISDGCP MDTATHQAND EHYLDQHLRQ VIARHERAGD VQIRALGVGL DLGVFYRRRL
AVDLREQIDE ALLMDVAELI CRR
|
|---|
| |