Gene Cthe_0856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_0856 
Symbol 
ID4810474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand+ 
Start bp1031425 
End bp1032495 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content41% 
IMG OID640106272 
Productbranched chain amino acid aminotransferase 
Protein accessionYP_001037283 
Protein GI125973373 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01123] branched-chain amino acid aminotransferase, group II 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTACC AAATCAGTAT TCAAAAAACA CAAAATCCAA AAAACAAACC TGACCAGGAT 
AACCTAGGCT TTGGCCAGAT TTTTACCGAT CACATGTTTA TAATGGACTA TACTGAAGGA 
AAGGGCTGGC ATGATCCAAG AATTGTTCCA TACGGCCCTC TTTCTTTGGA ACCCAGCACA 
ATGGTATTTC ATTATGGTCA GGCAGTTTTT GAAGGTCTGA AAGCTTACAA AACAGAGGAT 
GGAAGAATCC TTCTTTTCAG ACCAAGAAAA AACATGGAGA GAATAAATAT TTCAAATGAA 
AGAGTTTGCA TACCGAAAAT AGACGTTGAT TTTGCCGTAG AGGCATGCAA AACTCTTGTA 
AGTGTCGACA GAGACTGGAT TCCGGAAGCT GAAGGCACTT CTCTTTATAT ACGCCCGTTT 
ATAATCTCTA CCGATCCTTT CTTAGGAGTA AGACCGTCCT GGACATACAA ATTCATAATT 
ATTCTATCTC CTGTAGGAGC TTATTATAAA GAGGGAATCA ATCCCGTAAA AATATACGTT 
GAAAGCGAGT ACGTACGTGC CGTAAAGGGA GGCACAGGTT ATGCAAAGAC TCCCGGCAAC 
TATGCCGCAA GTCTCATAGC GCAGGTTAAA GCAAAGGAAC TGGGTTACAC CCAGGTACTC 
TGGCTTGACG GAGTTGAGAA AAAGTACATA GAAGAAGTAG GTACAATGAA TGTGTTCTTT 
AAAATAAACG GCGAAGTCAT CACTCCTTCC CTTGACGGAA GCATCCTTGC CGGAATAACC 
CGTGAATCTA CAATTGAGCT GCTTAGAGCA TCCGGCATAA AAGTAACTGA AAGAAAAATA 
ACCATAGAGG AAATTTACAA TGCTCATGAA GCGGGAACTT TAGAGGAGGC TTTTGGAACC 
GGAACTGCTG CGGTAATTTC GCCTATCGGC GAATTAAGCT GGAACGGCAA GGTTATAAAA 
ATAAATGACG GTAAAATCGG AGAAACAGCC TCGTTTGTTT ACAATACCAT CACAGGCATT 
CAAAGCGGCA AGATCGAAGA CAAGTTCGGA TGGACCGTTG AAGTAAAATA A
 
Protein sequence
MSYQISIQKT QNPKNKPDQD NLGFGQIFTD HMFIMDYTEG KGWHDPRIVP YGPLSLEPST 
MVFHYGQAVF EGLKAYKTED GRILLFRPRK NMERINISNE RVCIPKIDVD FAVEACKTLV 
SVDRDWIPEA EGTSLYIRPF IISTDPFLGV RPSWTYKFII ILSPVGAYYK EGINPVKIYV 
ESEYVRAVKG GTGYAKTPGN YAASLIAQVK AKELGYTQVL WLDGVEKKYI EEVGTMNVFF 
KINGEVITPS LDGSILAGIT RESTIELLRA SGIKVTERKI TIEEIYNAHE AGTLEEAFGT 
GTAAVISPIG ELSWNGKVIK INDGKIGETA SFVYNTITGI QSGKIEDKFG WTVEVK