| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_2262 |
|---|
| Symbol | |
|---|
| ID | 4026072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 2541021 |
|---|
| End bp | 2545028 |
|---|
| Gene Length | 4008 bp |
|---|
| Protein Length | 1335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637967466 |
|---|
| Product | ImcF-related |
|---|
| Protein accession | YP_574311 |
|---|
| Protein GI | 92114383 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.295752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTC TTCGCTTCCT GCGGTCGCTG AAAGGATTCT GGCCGCTCTC GATTGTGCTC
TGGCTGGTGG GGCTTGCGCT ATGCGTGCTG TTGCTGCCGC TGGTGACCCA GGAGCGCGAG
CTGATTTTCA TCGCCATGGC GCTGGTGACC GCACTGTGGC TGCTGGTCGT GGTGATGCGC
CAGTACCATC GTATTCGCGC CGAGCGCAAC ATCGAGAACC TGGTCGAGCT CGAGGTGCAT
CGTGAAGCCG CCGAGAACGA ACCCGGCGAT TATCAGGTGC TCAGCGAGCG GCTCAAGCAT
GCCATGGCGA TGCAGCGCGC TGCGCGCTCG GTGGACGGCG GCAAGGCCTC TCTCTACGAG
CTGCCGTGGT ATCTGGTCGT GGGCATGTCG GCCTCGGGCA AGACCTCGTT GCTGACCCGC
TCGTCGCTGT CGGCGACCAT GGCCGGTGGC GGCAACCTGT CGGCCGTCAG CGGCACCCAG
CATTGTGACT GGTACTTCAG CCGTGAGGCC GTGATGATCG ACACGGCCGG TCGCTACCTG
GTCGAGGATC GCCCCGCGAG CGAGTTTGCC GACTTCCTCA AGACGCTGCG CAAGCAGCGG
CGCAAGCCCG CGATCAACGG GTTGGTGCTG GTGGTCAGCT TGCCGGAGTT GCTCGAACAG
TCGCGTCAGG AAGCGCACGC CCTGGCCGAG CAGCTGGTGA CGCGGGTGGC AGAGTATCGC
AGCTGTCTGG GCATCAATCC GCCGGTCTAT CTTTTCTTCA GCAAGGCCGA CCTGTTGCCC
GGCTTCACGC GCACCTTCGA GGCGCTGGAC GCCGCCGAGC GTCAGACGCC CTGGGGGCTG
ACGTTCTCGC TCGATGAGGT GCGTCGCCAG GGTGTGGCAA GTGCGTTCCA GCAGCGTTTC
CCGGGGCTGG TCAGTGCGCT GCGTGCGCGG GTCGACGCGC GCATGGTGGA AGAGGGGGCC
GACGCCGACA GCGAACTGCT GCGCTTTCCC GATTACTTTG CCGAGCTGTT CGGGGTGCTC
AGCGATTTCC TCGAGCAGTT CGATATCCAG AACAATACCG ATCAGGCGCC GGTACTGCGC
GGTCTCTATT TCACCAGCGC CCTGCAGAGC GGTCCGGCAC TGCCGGCACT GCTCGACGAG
CAGACTCGCG ATGCCTTCGC GCTGGCGCCG AGTGCGGAGC CCGACAATAC GGCGCATCGC
GGCGAGCGCA GCTACTTCAT CACCGACACG TTCCGGAACG TCATCTTTCC GGACCGCAAT
CTGAGCCTTT ACTACTCCCG GGACGGGGAC CGGCGTTCGC TGCCGACCTT CATGATCGGT
ACCGTCGGCG CTCTGGGGGT GGCGGCCATC GCCGCTCAGG GATGGTCGGC CTACAACAAC
AAGCAGTGGC TCGATCACCT CCAGAATGAG GTGTCGGCGC TCACCGCCGG TAACAGCACC
GGATATCTGG CACCGCAGGA GCGGCGTGAA CTGCTCGACG ATCTCGAGCG GCAATTGTCG
GCGATCGAGC GGCATCGCGA GACCGGTGTG CCGTTGCGAC TTGACCTGGG GCTCTATCAG
GGCGATGCGT TGCGTGCGCC ACTCAAGCAG GCATGGTCCG CACTCTTCGA GCGCGATGTG
CTGGAACCGC TCTCCATGCG GCTTGCAAGC CAGCTCCGTT CTCTGCGCGC GTTCGGCAAT
GCCGACGACG ACGAGCCCGG CACACGCGGG GAAACGGATG AGGCTGCATC CGCATCGTCG
GCCGAGCCGT CGGCGACGAG TACTGCTTCC GCGGCCGTCG GCGAGGGGGG CCGCGAGATT
GGTGCCGATG CCATGGATCG CATGCAGGAG CGTTCCACAT CGCGCCCGAC GCTTGGCAGT
GTGCCGACCA GCGCCTCCGA GATCGGCAGC CGCGCGCGCA GCGAGCTGCG CTCGCGCACG
ACCGACAGCG CCCGGGATGC CTGGTATTCC GCGCGCAGCA GTGCAGAGAC TTCGCTCGAG
GAGGGGTTGC GCGACCGCAC CAGTGCACTG GGGACGACGG TCGGGAGCGC CGGAGACGAG
GAGGCCTCTC TTACGCTCTC TGGCGAGCAG GGGCCGTCGC TCTCCGAGGA GATGTTGACC
AGGCTTACAC AGCGGGACAT CGAGCAACTG ATCGAGAGCT ACTCGTCGCT GAAGCTCTAT
CTGATTCTCA CAGACCCGAC GTCGCACCGC GACCAGGGCG ATTTCGTTGC CTCGGCGCTG
CCTCGGCTGT GGGCCGATCA GGTCGGCCGC CGTGACCTGG CGACCTCTCG CGACAGCATC
ATGGACAACG CCGCGCTCTA CGTGCACTAC CTGCAGCAGG GCACGGCACC CGCGTTGACG
CGTGACGAGG CGCTGGTCGC CGATAGCCGT GATCGGCTCA ACGCCTTCCT CATCGACAGC
AGCCTCGTTG ACCGGGAGTA CCTGCGCTAT CAGCTCGAAG TCGAGAAACG CTTCGAGCCT
CTGACGCTGT CGCGCATGGC GCCGGACATG GAGGGTCGCC TGTTCTACAC CAGCCGCGCA
GTGCCGGCGT TCTACACCCA ACGGGTCTGG CACGAGTATC TACGGCCGGC GATCATCGAA
ACCGTGTCCG GTGATCTGCG GCGCGAATCG GACTGGGTGC TCGACGACGA GAATGTGGAT
GATGCGGTGC AATCGAAGGC ACGCTTCGTC AGCCAGCTGA TGACGCGCTA CAAGCGTGAC
TACGCCATCG CCTGGGAACG CTTCCTCGAT GATACTCATG TCGCCGACTT CGACACCCTG
GACCAGGCCA GTGTCCGCCT GGCGCAGCTC AGCGATCTGC AGGGCTCGCC CCTTCGTCAG
GTGCTGGAGG CGGTCAAGGC CAATACGGGC TGGGATGATC CCGAGGCGTC CGCAGAAGAG
GGCGACGCCG GCGGCAAGGC GCAGGATCAA AGCTTCTGGG GGCGCGTGAT GAGCGTCTTC
GACGGCAGCG ATGGCGAGGG GCCGGCAGTG GACCCGACGA CGTTGCCGCG GATCAACGAT
GGCGCGCTGG CGCGTCACTT TCGCCCGGTG ACGCGCATGC TATCCGTGGA CGAGGCCACG
GGAAGCGACA ATTCCGTCCT CAATCAATAT CTGCTGGACC TGCGGCAGCT CAAGGCACGC
GTGGATAACG TGCGCAGTGC TCAGGACGTG GGGCGCAGCA GCAAGTCGCT GATCATGGCG
ACGCTCGCCG GCCAGCCCAC CGAGATCAAC GGCCTGCGCA ACTTCGTGGC GTCGCGCGTG
GATACCTCGC GGGCCCCCCT GGTGCAGGCG ATGGAGCCGC TGTTCAGCGA CCCGGTGGAA
GATACCTGGA AAGCGCTGAA CGAACCGGCT CGCGATCAAC TCAATGCCGC CTGGGACGAC
AAGATCGTCA CGCCCTGGGA TCAGATGATC GCCGGGCGCT ACCCGGTCAG CGATTCGGTC
AACGAAGCTT CCGTGCGCGA CATGGAATAC TTCATCGATC CCGACGACGG CGTAATGGCG
CGGTTCCGGC AGGATGAGAT CGGAGATCTC GCAGGTTCCG GAAGCGGTCA GCGCTCATCG
ATGGTGGATC CGCGCATGCT TTCGAGCATC GACGACGCCA CGGCGCTGGG ACGGGTCATC
GACAGCCTCT CGGACTTGCA GAACGGCTTC GAGCTGCAGA TGAACCCCAC CGCCGGTCTG
ACCGACATCA TTCTGACCAT CGACGGACAG CGTCTGCACT ATCGCAATAA CACCCAATCC
TGGGAGCGGC TGATCTGGCC GGGCAACGGC GAGTCCTTCG GGGCCCGCAT GGATATCGTC
AATCGCGATG GACAGCGTCA TACCGTCTTC GACTACCCCA ACCGCTGGGG CTTTCTGCGC
ATGATCGAAA GCGCTCATAT CACGTCCATC GACAATGCGC GCCAGCGTTT CAGCTGGCGA
ACCTACATGG GGACTGTCAG CTTCGACGTG CGCAATTTCG GCGGTGTGAA GATCTCCGAC
CTGAAGCGGA TAAAGACGCT GCGGATACCG CAGGTGAGCG GTCAATGA
|
|---|
| Protein sequence | MRFLRFLRSL KGFWPLSIVL WLVGLALCVL LLPLVTQERE LIFIAMALVT ALWLLVVVMR
QYHRIRAERN IENLVELEVH REAAENEPGD YQVLSERLKH AMAMQRAARS VDGGKASLYE
LPWYLVVGMS ASGKTSLLTR SSLSATMAGG GNLSAVSGTQ HCDWYFSREA VMIDTAGRYL
VEDRPASEFA DFLKTLRKQR RKPAINGLVL VVSLPELLEQ SRQEAHALAE QLVTRVAEYR
SCLGINPPVY LFFSKADLLP GFTRTFEALD AAERQTPWGL TFSLDEVRRQ GVASAFQQRF
PGLVSALRAR VDARMVEEGA DADSELLRFP DYFAELFGVL SDFLEQFDIQ NNTDQAPVLR
GLYFTSALQS GPALPALLDE QTRDAFALAP SAEPDNTAHR GERSYFITDT FRNVIFPDRN
LSLYYSRDGD RRSLPTFMIG TVGALGVAAI AAQGWSAYNN KQWLDHLQNE VSALTAGNST
GYLAPQERRE LLDDLERQLS AIERHRETGV PLRLDLGLYQ GDALRAPLKQ AWSALFERDV
LEPLSMRLAS QLRSLRAFGN ADDDEPGTRG ETDEAASASS AEPSATSTAS AAVGEGGREI
GADAMDRMQE RSTSRPTLGS VPTSASEIGS RARSELRSRT TDSARDAWYS ARSSAETSLE
EGLRDRTSAL GTTVGSAGDE EASLTLSGEQ GPSLSEEMLT RLTQRDIEQL IESYSSLKLY
LILTDPTSHR DQGDFVASAL PRLWADQVGR RDLATSRDSI MDNAALYVHY LQQGTAPALT
RDEALVADSR DRLNAFLIDS SLVDREYLRY QLEVEKRFEP LTLSRMAPDM EGRLFYTSRA
VPAFYTQRVW HEYLRPAIIE TVSGDLRRES DWVLDDENVD DAVQSKARFV SQLMTRYKRD
YAIAWERFLD DTHVADFDTL DQASVRLAQL SDLQGSPLRQ VLEAVKANTG WDDPEASAEE
GDAGGKAQDQ SFWGRVMSVF DGSDGEGPAV DPTTLPRIND GALARHFRPV TRMLSVDEAT
GSDNSVLNQY LLDLRQLKAR VDNVRSAQDV GRSSKSLIMA TLAGQPTEIN GLRNFVASRV
DTSRAPLVQA MEPLFSDPVE DTWKALNEPA RDQLNAAWDD KIVTPWDQMI AGRYPVSDSV
NEASVRDMEY FIDPDDGVMA RFRQDEIGDL AGSGSGQRSS MVDPRMLSSI DDATALGRVI
DSLSDLQNGF ELQMNPTAGL TDIILTIDGQ RLHYRNNTQS WERLIWPGNG ESFGARMDIV
NRDGQRHTVF DYPNRWGFLR MIESAHITSI DNARQRFSWR TYMGTVSFDV RNFGGVKISD
LKRIKTLRIP QVSGQ
|
|---|
| |