Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6155 |
Symbol | |
ID | 8362337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7761074 |
End bp | 7764763 |
Gene Length | 3690 bp |
Protein Length | 1229 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644968285 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003125764 |
Protein GI | 256425111 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.597613 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTGTG CCAGACGGCA GTCTTTCCGG TTATCACCAC AAACAGTGAA GACAGTGAAA CTGAATGTTC TATTCATGTT TGCATTTCTG ATGCAAGTTA GTGCCAGCGG CTGGTCACAG GTCATCAACT ATTCCGGGAA CAATGTCCCG CTTACGACAA TCTTCAGCAT TGTTAAACAG CAAACCGGCT ACGTGGTACT CTACAATCCG GATCTGGTAA AGAAGACTAC ACCTGTAACG GTGCGTGCCA GCAATATGCC GCTGACCGCC TTCCTGGACA AAGTCCTGGC AGAAAGGTCA TTGGGCTATT CCCTGGAAGA TAAGACCATC TTTATTACAA AGCGTACCAC GCCTGCGCGT CCGGCAGTCA ATGAAGCTGC TGTTGAGAAA GCGGCAGTCA TTCTGCCAGT AGTAAGTGGT TTCATAAAAG ATGACAAAGG ACAGTTCCTG CCGGGTGTCT CTGTAAAAGT GAAAGGCTCA CTTTTCGGTA CCAGCAGTAG TGAATCCGGT TATTTCAAGT TAACGGGTAT ACCTGCTGAT GCTGTGCTGG CTATCTCCAG TGTAGGGTTC GAATCTCTTA ACATCCCATT GCAGATGTGC TGTAACAGGG TCATGGTAAA GAATGTCGAC GCTACCATGG GTGATGATGG CAGTCTGGTA CTGACTATTA CCATGAAACT CGCTGTGAAA TCACTCGAGG AGATCGCTGT TACGAATACC GGTTATCAGG AATTGCCAAA AGAACGTTCT ACCGGTGCTT ATGGAACTGT TGACAATAAA GCGCTCAATG CCCAGATCAA TACAGACCTG GGTGCCGCTG TTGAAGGTAA GGTAGCGGGC CTGAGTCTTT ACAAAGGTGA GCCAATGGTC AGGGGATTGA GTACATTTTC AGGAAGTGTA GGTACGTATC CGCTGATAGT ACTCGACGGA CTGCTTACTG AAAATACCCT GGATATGATC AACCCTTATG ATGTCGAGTC TATTACCGTA CTCAAAGATG CTGCTGCAGC GTCCATTTAT GGTGCGCGTG CCGCAAATGG CGTCATTGTG ATTAATACAA AGAAAGGTAA AAGAGGAGGG GTCAGTCTCT CAGTAAATGC AGATTACTTT GTAACAGAGC GTCCTGACCT TAGTAAGATG CATTACGCTA CTTCCGGGCA GATGGTTGAT TATGAAAGGG ATATCTATGC AGGTGAATTA CGCCGGTATG CAAATGCGCA GGAATTATTT AACTACTATG GTAGCGTTGG CGGAAACACG AGTAGATACT TTTCTCCATT GTACAATCTG TACAGAAAGG AAAGCATTGG CGAGATCAGT ACACATGAAA GAGACGCTGC CATCGAGCAA TTGAAAAGCT ACGACTATTA TCAGCAGTTT CATGATAATG TATGGCAGAA CCAGGTGCGG AAACGTTTTA ATATTTCACT TGGTACAGGC AGTGACAAGA GCAATACGTA TTTTTCCATT AACTACGATG GTAACAACCA GCTCATACGC AATAACACCG ACGAGAACCT GAACATTTAT CTGAAATCAA GCTTTAGTCC GCTTCCCTGG CTGACGGCAA CATTCGGTGC AAACGGTGCT TATTCGAAAG TAATAGCATC GGAGAATCTC TATACTGACT ATAAGACACA ACCTCGCTAT AGTCGCATCG TAGATGAAAA TGGGAATCGC GTTTATGCTG ACTATGTATC ATTCAGAGAC GGTTTTAGTA GCTCTGATTA CGTAAATGGT ACTGTCATTG ATCAACTAAA GGGCAATACA CAATTTAAAT CTTTCAGTTT CAATCTGCTC GATGAACTGG ATAATAGCAG GAGTAAATCA CAGCAACTGC GTTTGCGTAC ATTTGCAGAT ATAGGCGCTA AGTTGTTTGC GGGATTGAAA TACAGCCTGA AGTTCCAGTA CGAAACGTCG CGGAATGAAC AGGAGAGTTT TGCAGGAAAG GATGATTACC GCATGAGGTA TCTCTACAAC GCAATGACAA GCTATAATGC AACGACTAAC ATTTATACAC ACGAAATTCC CTTTAGCGGA CGTCTTTACC AGATGAATCA GCAGGCGGAC AACTTTACCT TCCGCCAGCA GCTTGATTTC GACAGGTCAT TTAATGTCAA TGGCAGAACG CATGATTTCA ATGCCATTGG CGGTTTTGAA ATGAGACAGT CCCGCACACC GGTATCTGTA AGCGACCTGC GGTACGGATA TGATCCTGTT ACATTGACTT CCCAACAGGT GGATTGGTAC CGCCTTGGTG AATCGGGGAT CAATAGTTAC CTGTTTGGTA CAACTACACT TGGTTATCAA CCGGGAAAGA ATAAAACAGA GGTACGCCAC AGATTTGCAT CTTACTATGG TAATATCGGT TATACCTTTG ACCGACGTTA TAACGTCACT GCCAGTGCAA GGATAGATCA GACCGACCTG TTTGGTACAG ATCCGAAATA CAGGAACCGC CCGCTGTGGT CAGTCGGTGC AGGATGGAAC GCAACAAATG AAGCATTCCT GAAAAATATC AGCTGGCTTG ACTTCCTGAA AGTGCGCGTG ACTTATGGTG TGAATGGTAA CGTCGATCAG ACCTCATCTC CATATATCAC CGCCAGACTG AGAAGTGATA ACCTGTTCAC TGAATTACAG TATACAGACA TCCTTGCATT GCCTAACCCG AAGTTACGCT GGGAAAAAAC GGCGACGCTC AACTTCGGTA CAGATTTTAC TATATGGAAT AACCTGCTGA GAGGTAGTAT TGATTACTAC AGAAAATACA GCTCAGACCT GATTGCTACA AGCACGCTTG ACCCTACGGT AGGTACCAGC TCCCTCAGCA TCAACAACGG TGCGATGTCT AATCGTGGTA TCGAACTCAA TCTTTCTTCA GAATGGCTGA ATAAAAAAGA TTTCGGGGCC GTGTCGTCAT TCGTGATCGC CTTTAACAGG AACAGGATAG AAAAGGTAAG CAATGCCGCG ACAACCGGAT ATTCATATAT ATCGTCTCCG TCAAACTACT ATTATCCCAA TACACCGTTT AACTCCGTAT ACGCTTACAG ATATGGCGGA ACTATCAATG GATACCCGTA TATACTGGAT GAGAACGGCC AGCCTAATGT GATTTTCGAT GCAAATGGGA ATCCTACAGA CGTTAAACAG GTAAATGGTC CTGCTGCGAT AATCAGAGTA GGTACACTGA TCCCTAAGTT CAACGGCTCA TTCCGTCAGA GTTTCCGCTA TAAAGGCGTA GAACTGGGTG CTATGTTTGC TTTCTATGGT GGCCATCAGA TGAGAAGAGA TCGTATGGAC TTTTCGGGTA CTACCCAGCA GAACCGCGAA CTGGCTAATC GCTATAAAGA TGAAGTTCCG AATGGTAATC CGAGACTGGA ACTGGACTAC CCTGATGTCC TCAGAAGTTA TGCTACTACA CTGTCTTCTT ACTGGCGTTA TTCAGATATT CAGGTGGTGA GCGCTACTTC TGTCAAGCTA CGTAATCTTT ACTTATCCTA TACCTTGCCC CAATACCTGT GCAAAAACAT ATTCGCTAAA CAGGTAAAGT TCACTGCACA GGCGAATAAC CTGTGGATGT GGAGTAAAGC CGGGGACGAT CTTGACCCGG AAACAGCAAG CCTTAACAGT GGGACCAGAA ATCTGCCTAC ATCGCGTTCA TTCCTGTTCG GTGCAGCGGT TAGTTTCTAA
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Protein sequence | MSCARRQSFR LSPQTVKTVK LNVLFMFAFL MQVSASGWSQ VINYSGNNVP LTTIFSIVKQ QTGYVVLYNP DLVKKTTPVT VRASNMPLTA FLDKVLAERS LGYSLEDKTI FITKRTTPAR PAVNEAAVEK AAVILPVVSG FIKDDKGQFL PGVSVKVKGS LFGTSSSESG YFKLTGIPAD AVLAISSVGF ESLNIPLQMC CNRVMVKNVD ATMGDDGSLV LTITMKLAVK SLEEIAVTNT GYQELPKERS TGAYGTVDNK ALNAQINTDL GAAVEGKVAG LSLYKGEPMV RGLSTFSGSV GTYPLIVLDG LLTENTLDMI NPYDVESITV LKDAAAASIY GARAANGVIV INTKKGKRGG VSLSVNADYF VTERPDLSKM HYATSGQMVD YERDIYAGEL RRYANAQELF NYYGSVGGNT SRYFSPLYNL YRKESIGEIS THERDAAIEQ LKSYDYYQQF HDNVWQNQVR KRFNISLGTG SDKSNTYFSI NYDGNNQLIR NNTDENLNIY LKSSFSPLPW LTATFGANGA YSKVIASENL YTDYKTQPRY SRIVDENGNR VYADYVSFRD GFSSSDYVNG TVIDQLKGNT QFKSFSFNLL DELDNSRSKS QQLRLRTFAD IGAKLFAGLK YSLKFQYETS RNEQESFAGK DDYRMRYLYN AMTSYNATTN IYTHEIPFSG RLYQMNQQAD NFTFRQQLDF DRSFNVNGRT HDFNAIGGFE MRQSRTPVSV SDLRYGYDPV TLTSQQVDWY RLGESGINSY LFGTTTLGYQ PGKNKTEVRH RFASYYGNIG YTFDRRYNVT ASARIDQTDL FGTDPKYRNR PLWSVGAGWN ATNEAFLKNI SWLDFLKVRV TYGVNGNVDQ TSSPYITARL RSDNLFTELQ YTDILALPNP KLRWEKTATL NFGTDFTIWN NLLRGSIDYY RKYSSDLIAT STLDPTVGTS SLSINNGAMS NRGIELNLSS EWLNKKDFGA VSSFVIAFNR NRIEKVSNAA TTGYSYISSP SNYYYPNTPF NSVYAYRYGG TINGYPYILD ENGQPNVIFD ANGNPTDVKQ VNGPAAIIRV GTLIPKFNGS FRQSFRYKGV ELGAMFAFYG GHQMRRDRMD FSGTTQQNRE LANRYKDEVP NGNPRLELDY PDVLRSYATT LSSYWRYSDI QVVSATSVKL RNLYLSYTLP QYLCKNIFAK QVKFTAQANN LWMWSKAGDD LDPETASLNS GTRNLPTSRS FLFGAAVSF
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