Gene Cpin_5708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5708 
Symbol 
ID8361888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7276240 
End bp7278234 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content50% 
IMG OID644967850 
ProductBeta-N-acetylhexosaminidase 
Protein accessionYP_003125331 
Protein GI256424678 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGT TAGTTACTTG TTTCGCCGTA GCGATGCTAT TCGGCGGTAC TGCTGCTGCT 
CAGACGAATC AAAACGCTTA TCAACCAGGT AATCCGTCAT CAACAAGGGC TGTAACCTTG
CCCGCGATTT TTCCTGCACC CGTATCTATC GAACTGGGGA GGGGCGCTTT TGTATTGGGT
AAGTCTGTTG TACTGATTGT GCCGCCAGGT ACCGACACCG AGAGTGTAAC CCTGTTGCGG
AGGATGTTGA CGTCAGCAGG AGCAGCGACT ATTGCGACAG CAAAGCAGCT GCCTCCGGTA
TTAGATCGTC CTTATATCAT GCTCGGGACT ACGGACGTAG CGATTGTGCG TGCAGCACTT
ACAAAGAAAG GGATCGTGCC TGATAATAAC ATGGAAGGAT ATACGGTTTC AAGTGAGTTA
GTAGATAACG GTGCGCTGAT CACACTGGCT GGCCACGATG CGGACGGTTT GTTTCATGCC
GTGCAAACTT TTCGCCAGTT GCTGACACGT CCGTTTATTC CTTCGCTTGT TATTAAGGAT
CATCCGGCAA TGCCCATCCG CGGAACAATT GAAGGCTTTT ATGGCAAGCC ATGGTCCATG
ACAGACAGGG AGAAACATCT AAGCTTCCTG GGGACTGTCA AAGCCAATAC CTATGTATAT
AGCCCCAAAG ACGATCCTTA TGCCAGGGAT CGCTGGAGAG ATGCTTACCC GGATGCAACC
ATAACGGAGC TTGGTAAGTT GGTGGCAGCG GCGCGGAAGA ATCATATCAA TTTTGTATAT
GCTATTTCTC CTGGACCCTC CATCTGTTTC TCCGATTCCA GCGACCTTCT TACACTGGAG
AGAAAGTTTA AAGCCCTGCG CTCAATAGGC GTGCGTAGTT TCTATGTAGC GCTCGACGAT
ATTGAGTATA CCAAATGGAA TTGTGATCTG GATAAGACCA CCTTTGGACC ATCTGGTGCA
GAGGCAGCAG GTATTGCGCA AGCAAGATTA CTGAACAGAT TACAGGCACA CCTGAAATCC
ATTGATCCGA CAGCGCCTCC GCTGATTATG GTGCCTACCG AATATTACGA TGCGAAGGAG
AGTCCGTATA AAGCAGCCTT GCGGAAAAAT CTTGATTCAC AGGTCGTTGT ACAGTGGACA
GGAACTGATG TTGTGCCGCC TGCTATCTCG GTTCCTGACG CGCGTGCAGC AACAAAAGCA
TTTGGGCGCA AGACGCTGTT GTGGGATAAC TACCCCGTTA ATGATTATGG AGAATCGACA
GGGAGATTGC TGCTCGCTCC TTATTTAAAA CGCGAAGCTG GCTTGTCAAC AGAACTGGCA
GGTATTCTGT CTAATCCAAT GAACCAGGAG TCAGCCAGTC GTGTTGCTGT AACCGGAGTG
GCCGCTTTTG GCTGGAATGA TAAGGATTAT GATGGAGAGC GGATCTGGAT TGCGGCCGCC
CGTGAACTGG CAGGTGGAGA TGAACAGGCT ACAACCGCCT TGCTGACCTT CTTTGATACC
CAGCATATGG CGCCAACCTT TGGTAGTCAA CCCTGGCAGG TGCAGGCGCC TAAACTGAAG
GCAATGCTGG ATGGTGTACA GGACGCGATT GCGAATGGCA ATGATGAAAC CAGGCATCGG
GCTATTGCTG ATCTGATACA ACATGCAGCG GAATTTGCGG GTGCTCCCGA TATCATCAGG
TCCGGCACTG TAGATACCGC GTTTGCGCAG GAAGCCCGCC CATGGCTTGA CGCTATGCAA
TTATGGGGAA AAGCGCTTCA GCTGACAGCC GCAGGGCTAC AGGCTGCTGA TCGTGGGAGC
AATGCCGCAG AACGCTATTT TGCCAATGCT AAACGCTTCG CTGCACAGGC AGCTGCTATC
AGGAGCATTC CCGGTGCTAC CCGTTTTGAC GGTCCGATAA AGCTGGCAGA CGGTGTCCTG
GATAATTTTA TCGCAAATGC GCCTAAATTG ATTGCATTTA CTGCAGGAGA AAGAGCAAAT
GTTGCTGAAA AGTAA
 
Protein sequence
MKMLVTCFAV AMLFGGTAAA QTNQNAYQPG NPSSTRAVTL PAIFPAPVSI ELGRGAFVLG 
KSVVLIVPPG TDTESVTLLR RMLTSAGAAT IATAKQLPPV LDRPYIMLGT TDVAIVRAAL
TKKGIVPDNN MEGYTVSSEL VDNGALITLA GHDADGLFHA VQTFRQLLTR PFIPSLVIKD
HPAMPIRGTI EGFYGKPWSM TDREKHLSFL GTVKANTYVY SPKDDPYARD RWRDAYPDAT
ITELGKLVAA ARKNHINFVY AISPGPSICF SDSSDLLTLE RKFKALRSIG VRSFYVALDD
IEYTKWNCDL DKTTFGPSGA EAAGIAQARL LNRLQAHLKS IDPTAPPLIM VPTEYYDAKE
SPYKAALRKN LDSQVVVQWT GTDVVPPAIS VPDARAATKA FGRKTLLWDN YPVNDYGEST
GRLLLAPYLK REAGLSTELA GILSNPMNQE SASRVAVTGV AAFGWNDKDY DGERIWIAAA
RELAGGDEQA TTALLTFFDT QHMAPTFGSQ PWQVQAPKLK AMLDGVQDAI ANGNDETRHR
AIADLIQHAA EFAGAPDIIR SGTVDTAFAQ EARPWLDAMQ LWGKALQLTA AGLQAADRGS
NAAERYFANA KRFAAQAAAI RSIPGATRFD GPIKLADGVL DNFIANAPKL IAFTAGERAN
VAEK