| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5504 |
|---|
| Symbol | |
|---|
| ID | 8361681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7019758 |
|---|
| End bp | 7021203 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967650 |
|---|
| Product | altronate oxidoreductase |
|---|
| Protein accession | YP_003125134 |
|---|
| Protein GI | 256424481 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0246] Mannitol-1-phosphate/altronate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.578611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00540225 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTGA ACAAACAGTT TTTGACAGGC AAAGCGCGTG CTGTATTGCC CGAAAAAGTA
CTGCAATTCG GTACCGGTGT GTTACTGCGT GGTCTGCCTG ATTATTTCAT TGATAAGGCC
AATAAGGCCG GTATTTTCAA TGGGCGTATC GTCGTGGTGA AATCCACTGA TAAAGGCAAT
ACCGATGCTT ACAGTGAACA GGATTACCTG TATACGCATT GTATCCAGGG GATCATGCAG
GGAAGAAGAG TAGAAGAGTA TGTTGTCAAT GATGCGATCA GCAGGGTATT GTCTGCTACC
GGTGAATGGG AACAAATCCT GGAATGCGCG GCTGATCCGG AGATGGAGAT CATTATTTCC
AACACGACAG AGGTGGGTAT TACACTGACG GCGGATAACA TAGATGCTGC TCCGCCGGCT
TCTTTCCCGG GTAAACTACT GGCATTTCTT TTACGTCGTT ATCGGCATTT CAAAGGAGAT
ATCAATAAGG GAATGGTTAT CATTCCTACA GAACTGATCC CTGATAACGG GACTAAATTG
CAGCACATCC TTTTAGAGCT GGCGCAACAG CATCAGCTGG AAGCTGCTTT TATCAACTGG
TTATCTGCTG CGAATCATAT CTGTAATTCA CTGGTGGACC GTATCGTTCC GGGCGCTCTT
CCGGCAGCTG CACAGGCTGC GGTGGAAGCG CAACTGAGGT ATTCAGATCA ACTGATGATC
ATGTCAGAAC CTTATGCTTT ATGGGCGATA GAGACCTCCA GTGAGCGGGT CAGGAAGGTG
TTGTCATTTG CACCTGCGGA TAGCGGGGTC GTGCTGGCGC CGGATATTAA TATCTTCCGC
GAACTGAAAC TACGGTTGCT GAATGGTACG CATACGCTTA GCTGCGGACT GGCCGTATTG
GCAGGATTTA ATACAGTAAA AGAGGCAATG GAAGACACCG CCATGGAAAG CTGTATCTCT
GCGCTTGCGC AACATGAAAT AGTACCTGCT ATTACGGATG TAACGATCCG GGAAGATGCG
GCTTTACGTT TTGCCGGCAG TGTGCTGGAT CGTTTCAGGA ACCCCTTTAT CGAACATCGC
TGGCAGAGTA TCACCATGCA GTATACCTCC AAAATGAAGA TGAGGGTGAT ACCTGTGATC
GTACGACATT ATCAGCGCCT GGATGAAGTT CCTGCACTGA TGGCCTTAGG CTTTGCAGCT
TACCTGTTGT TCATGCGCGA TGGAGAGGTG ACGGATGACT ATGCAGCCTA TTTTAAAGAA
AAATGGCAAA AACTGGAACC AGCTGTACTT GTACAGACCG TGTTGAAAGA TACCGCCCTT
TGGGGAGTAG ATCTTACGCA GTTACCGGGT TTTTCACATG CCGTTACTAT CATGATGGGC
GCTTTGCTCA CAGAAGGAGC ACCGTCACTA ATCAGACGGG TATCAGAAGA AACAACGATC
GCTTAA
|
|---|
| Protein sequence | MQLNKQFLTG KARAVLPEKV LQFGTGVLLR GLPDYFIDKA NKAGIFNGRI VVVKSTDKGN
TDAYSEQDYL YTHCIQGIMQ GRRVEEYVVN DAISRVLSAT GEWEQILECA ADPEMEIIIS
NTTEVGITLT ADNIDAAPPA SFPGKLLAFL LRRYRHFKGD INKGMVIIPT ELIPDNGTKL
QHILLELAQQ HQLEAAFINW LSAANHICNS LVDRIVPGAL PAAAQAAVEA QLRYSDQLMI
MSEPYALWAI ETSSERVRKV LSFAPADSGV VLAPDINIFR ELKLRLLNGT HTLSCGLAVL
AGFNTVKEAM EDTAMESCIS ALAQHEIVPA ITDVTIREDA ALRFAGSVLD RFRNPFIEHR
WQSITMQYTS KMKMRVIPVI VRHYQRLDEV PALMALGFAA YLLFMRDGEV TDDYAAYFKE
KWQKLEPAVL VQTVLKDTAL WGVDLTQLPG FSHAVTIMMG ALLTEGAPSL IRRVSEETTI
A
|
|---|
| |