Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5342 |
Symbol | |
ID | 8361519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 6821940 |
End bp | 6825551 |
Gene Length | 3612 bp |
Protein Length | 1203 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644967490 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003124974 |
Protein GI | 256424321 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0135995 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0211304 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAAA GCAGGCGCCA TGGCAACCGG TTATCAACCA AAATCTTGTT AGTGATGAAA CTAACCGCGC TATTATTGAC CATTGCATTC ATGGGGGCCA GTGCAAAAGG TGTCTCACAA GCTGTTACAT TCTCCGGTAA AAATATTCCG CTGGAGAAAA CGTTCGAAAC CGTCCGCTCC CAGACAGGCT ATCATGTGTT CTGCGACAGC CGCCTATTAA AAGAGGCGCT TCCCGTAAAT GTCAATGCAG ACAATATGCC GCTGACCCAG TTCCTCGATA TCATCTTCAG GAATCAGTCA CTGCAATACC TCATACGCGA ACAGACAATC TTCGTCAGCA AAAAAACAGC GACCAACGCG GATCCGTCAA AAGTGCTGGA AACTGCTAAT GTAGTACTGG TACAGGGTAT CGTCACCGAC GAAAATAAAA ATCCCTTATA TGGCGCTACC ATCAAGGTAA AAGGTACCGA ACGCTCCATC ATCAACCAGC AGGATGGCCG CTTCGAAATA GCAGTCAACA TAGGTGATGT ACTCATCGTC AGCTTTGTGG GTTTCCAGAC ACAGGAAGTG AAGATCTCCA ATAGCACCGA TCTCACCATC GTATTAAAAC GCGCCACCAT CAACATCGAT GAGATCAACG TAAAAGTCTC CACCGGTTAT CAGACGATCT CCAAAGAACG AGCAACCGGT GCCTATAACG TCATTACGGC CGACGAATTA CAGGACGTTC CTGCCAATAA TATATTAGAA AGACTGGAAG GTAAAGTACC TGGTGTACGC TTCGATATAC GTTTCAATAA AATACAGATC CGTACTATCA ACACCTATTC TATCAATACA GCGCCGCTCA TCGTGATAGA CGGATTTCCG CTGATATCGG CATCTTCCGG TGATCAGAAC CTGACTGCAC TGGGTAGCTC CCAGATGTCC AACGGTTCAG TATTATCTAC CCTCAATCCC AACGACATTG AACAGATCAC CTTTCTGAAA GATGCCGTGG CCACCTCTAT ATGGGGTTCC AGGGGTGCAA ACGGAGTGAT CGTGATTGAA ACAAAAAGAG GTAAAAAAGG GGCGCCTACG CTTAACTTTT CTGCTACCAT AGGTACCTCC AAAGCACCTT CTTTCTCTAA GCTCCGATGG ATGAACAGCG CCGAATATGT AGACCTGGAA AGAGAAATGT ATGACAAAGG TTTCTTTACT GATAATACAC AATCTCCCTG GTACTTCCCC CTGCAGAACA ACAACCCGAG CGAAGTAATA GAATGGCTTT TCAAAGTAAA ACGTGGCACC GCCACACAGG CAGAAGCAGA TGCTGCACTG GCAGAGATCG GAACCAGAAA TAACCAGTCA CAGATACGGA AATACCTGCT GCGTTCAGCG GTTAACCAGC AGTATAATCT GTCTGTATCG GGTGGCGGCG ATAACAACAC CTACTACATC TCCGGCAACT TCAATAAAGA CCTGCCGATT TACCATGGTA ACAGTGCACA AAATGCGATT ATCACCGGTA ACTTTACCAA TGACCTGTTT AACAAAACCG TCAAACTGAG AACAGGCTTC AACTACCAAT ACGCCGTCAA TACTGCAAAC ATCGCAGCGG TGGAAGCTTT AAGCCAGTCC CTCATATCCC TGCGTCCCTA CGATATGCTG GTGGATGGTA ATGGTCAGCC GATCAGACGT AGCATTACCA TGCGTCCCGA AACGAATGAC AGTCTGGTAA AACTGGGTTA TCTGCCGTTT ACCTACAGTG CCATCGATGA ACTGAACTAT TCCAATACCA AAAACAGCAT CAACTCCATT CGCCTGAATA CCGGTCTGAA TGTAAAACTG ACAAACTGGA TGAACTTCGA TGTATCCGGT ATGTACCAGC GCAACATTAA CAATATGCAG ACCATCAACG AAGTAAACAG TTACGCCGGC AGAACCACTG TCAATACTGG AACTGTTATT TCGCCCACCA CGCATAAACC TGTATACAAT GTTCCCTACG GCGGTACATA TACACTCACT GATGGCAACT CCTGGGACTA TAACCTGCGC GGCATGCTGA ATGTCAATTA TGCGTTCAAT GCAGCGCATC AGCTGACAGC CATCGCCGGT AGCGAGATCA GACAAACCTA TAGCAGGTCA TATAGTAGTA TCAGGTACGG TTATGATCCG GATGCCAACA GCTTTGCTAC GGTGAACCCG ACCACACCAT TTATGACCAT GTACGGCTGG GCCTCCACCC TCGGCAGCAA CCAGAGTGGT ATATCAGAAC AACGGAACCG TTATCTCTCC TACTTCGGTA ATGCAGCCTA CACTTATAAA AACAGGTATA ACCTCAGCGG TAGTATGCGC TTTGATGATT ATACCCTCCT CGGACTGGAA CGCAGCAAAC GTGCAAAACC ATTCTGGTCT GCCGGTTTCA AATGGACCGC CACCGGAGAA GAATTCATGC AGTCCGTCAC CTGGATGACC AACCTGGGTC TGCGCGTCAC CTATGGTACC GGTGGATCAG TACCATTAGG CGGCACCAAC GTACCAATCA TTACGTTAAA TGCAACAGAT CCGAATACAC AGCTGCCAAT CGCTACCATT CAAAATCCTG CAAACCAGCA ACTGGGATGG GAACTGACCC GTACCGGCAA CATCGGCATG GATGCAGGCG TACTGAATAA TCGTATCTCA GGAAGTATTG ATGTATATCG CAAGAAAAGT TCCGGTATCC TCGCCACCTT CCCCTTCAAT CCGACCTATG GATGGTCCAG CCTGTCTTAC AATACCGGCA CCATGAAAAG CCATGGTATT GAAACAGGTA TCACTGCGAA GATCATAGAC AAAAAAGACT GGGGTATTAC TTCTGTATTT AACTTCTCTT ATGGCAAAAC AGAAGTGACA GATTCCCGAT TTAATACTAC GCTGGCTTCT ACCCTGGTAA TGAGCAGTAA CATGGTGAAT GGCTATCCAA TGGGGGCCAT GTTTGTATAC CGCTCCGCAG GACTGAACCC GGAAACCGGA CAAACACGCA TCTACGACAG GAATAACAAG ATCATCGAAA GCACCACCAA CCTGACATCT GCCTTCGACA TCAACGACAT CAAATATGTG GGACAGTCAA CAGCACCTTA TCATGGTGGG TTCTTTAACA CGTTCCGTTA TAAAGGCTTT GAACTGGACG TACAGATGAC CTATTACTTC GGACATAAAT TCCTGGCCCC TTCGATCAAT AACTATCCGC AGTTCTCCGG CGAATACTAT GGTATCGTAG GAAGACAAAA GGATCTGGCC AACAGATGGC GTAAACCGGG GGATGAAGCC TTTACAGATG TACCAGGCCT GGGCAACGTC AACTTTAATA GTATTACCCG TTACCGCTAT TCTGATAAAC TGGTACGCAG CGCAGATAAT ATCCGTTTAC AGCAGATCTC CCTGTCGTAT AATTTCCCGA ACAGTATGCT GCCTAAACGC ATATTCAAAA GTCTGACCCT GAGTGGCAGT GCACGTAACC TCGGCATGAT CTGGGCGAAG AACAAGGAAG GTTACGATCC TGAATACCTC AACTCCAGCG CAAACTACTA TAGTATGCCG CCGGTAACCA GCTATCTGTT CAACATCAAT GCTTCATTCT AA
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Protein sequence | MPESRRHGNR LSTKILLVMK LTALLLTIAF MGASAKGVSQ AVTFSGKNIP LEKTFETVRS QTGYHVFCDS RLLKEALPVN VNADNMPLTQ FLDIIFRNQS LQYLIREQTI FVSKKTATNA DPSKVLETAN VVLVQGIVTD ENKNPLYGAT IKVKGTERSI INQQDGRFEI AVNIGDVLIV SFVGFQTQEV KISNSTDLTI VLKRATINID EINVKVSTGY QTISKERATG AYNVITADEL QDVPANNILE RLEGKVPGVR FDIRFNKIQI RTINTYSINT APLIVIDGFP LISASSGDQN LTALGSSQMS NGSVLSTLNP NDIEQITFLK DAVATSIWGS RGANGVIVIE TKRGKKGAPT LNFSATIGTS KAPSFSKLRW MNSAEYVDLE REMYDKGFFT DNTQSPWYFP LQNNNPSEVI EWLFKVKRGT ATQAEADAAL AEIGTRNNQS QIRKYLLRSA VNQQYNLSVS GGGDNNTYYI SGNFNKDLPI YHGNSAQNAI ITGNFTNDLF NKTVKLRTGF NYQYAVNTAN IAAVEALSQS LISLRPYDML VDGNGQPIRR SITMRPETND SLVKLGYLPF TYSAIDELNY SNTKNSINSI RLNTGLNVKL TNWMNFDVSG MYQRNINNMQ TINEVNSYAG RTTVNTGTVI SPTTHKPVYN VPYGGTYTLT DGNSWDYNLR GMLNVNYAFN AAHQLTAIAG SEIRQTYSRS YSSIRYGYDP DANSFATVNP TTPFMTMYGW ASTLGSNQSG ISEQRNRYLS YFGNAAYTYK NRYNLSGSMR FDDYTLLGLE RSKRAKPFWS AGFKWTATGE EFMQSVTWMT NLGLRVTYGT GGSVPLGGTN VPIITLNATD PNTQLPIATI QNPANQQLGW ELTRTGNIGM DAGVLNNRIS GSIDVYRKKS SGILATFPFN PTYGWSSLSY NTGTMKSHGI ETGITAKIID KKDWGITSVF NFSYGKTEVT DSRFNTTLAS TLVMSSNMVN GYPMGAMFVY RSAGLNPETG QTRIYDRNNK IIESTTNLTS AFDINDIKYV GQSTAPYHGG FFNTFRYKGF ELDVQMTYYF GHKFLAPSIN NYPQFSGEYY GIVGRQKDLA NRWRKPGDEA FTDVPGLGNV NFNSITRYRY SDKLVRSADN IRLQQISLSY NFPNSMLPKR IFKSLTLSGS ARNLGMIWAK NKEGYDPEYL NSSANYYSMP PVTSYLFNIN ASF
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