| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4886 |
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| Symbol | |
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| ID | 8361062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6112031 |
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| End bp | 6115765 |
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| Gene Length | 3735 bp |
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| Protein Length | 1244 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644967036 |
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| Product | SMC domain protein |
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| Protein accession | YP_003124521 |
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| Protein GI | 256423868 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.110633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.678618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAT TAGCCATTCG TTTCAAGAAC CTGGCATCAC TGGAAGATAC GAACGAGATA
GATTTCACAA AAGAACCATT GAGCAAAGCA GGGATCTTTG CTATTACCGG TCCGACAGGC
GCTGGTAAGT CCACCTTACT GGATGCCCTT TGCCTGGCCT TATATGCAAG AACGCCCCGT
TATCTGCAGG CTAAGGAAAC CGGTATAGAA ATACAGGATC AGGGAGGCAA TAAAATCAGC
CAGGGTGACG TCAGAGGTAT TTTACGTGAT GGTACAGCAG AAGGTTTTGC AGAGGTAGAA
TTTGCTGGAG TTGACGGCAA TAACTATAAA GCAAGATGGG CCGTTAAACG TGCCCGCAAT
AAGATCGATG GTAACCTGCA GGCGGATACG GTGGAATTAT TTAATCTGAC GACCAACGGT
GTTTTCCCGG GCAAGAAAAC AGAAACCCTG CGGGAAATAG AAAGGGTGGT CGGACTGAAC
TTCGAACAGT TTACCCGTTC GGTATTACTG GCACAGGGCG ACTTCACCGC CTTTCTGAAA
GCAGATAAAG ATGCCAAGGC TTCCCTCCTG GAAAAGCTGA CGGGGACAAA TATCTATTCT
GAAATATCCG TAGGCATCTA TAATAAATTC AAAGAGGCGG ATACGGAACT CAGGAATCTG
AAACAACAGG TTGCAGGTAT TGAGCGACTG ACAGAAGAGG AAAGAATGGC CCTGCACGCA
CAACAGGAAG AACTGGGTGC TAAGATCAGC AGCCAGCAGA TCACTATCGC AGAACTGGGC
GCTGCGATCA GCTGGTATCA GTTGCTGGAT ACCCTGGAAA AGAACAGGGA ACAGGCCACC
GATCAATACC AGCAGGCTAC CCTGGCCATG GAAAATGCGG GAGAAAGGAT CCGCAACTTT
ACACTGGTAG AACATGTACA GGCAGCGAGA GGTCCGGTGG AAGCCAGAAG GTCGCATGAG
CAGCAACTGG CCGAGAAAGA GAAGGCTTTA CAGGAGATCG ATGCCCGTAT TATGCGAACT
ACGGAAGCAC AACAACAGGC AGCGACAGCA CTGGAAACTG CGCATGCAGC GGTATTACAT
GCACAGCAGG AAGCCGCGAA ACACCAGCCT GATATAACAC GTGCCAGGGA ATTAGATACG
CTGACAGGCG AAAAGGACCG GCAGCTGCAA CAGGCAGTAA CGGAAGCAGC CAACGCACAA
AAACAACAGG ATGCCCATCT GAAAGCATTT GAGGAAAAGG AAAAAGAGAT CCATACACTT
GCACAGGCCA TCAGCAAACT GGAGGACTGG CAAAGGGATC ATCTCGGCAG AAAAGATATT
GCAGAGAATA TTATAGAAAT CAGCGCACAA CTGGGGCATA CTGCCAAACT ATTGCCCGTA
CAACAGGAGG CGCTGAAAGA GCAGCAGGAG AATGCCAGTT TTATCCGGAA AGCACAGGAG
CAGATAACAG ACTTACAGGA AAAAGCAGAC AAAGAACAGG CAGAGAGCGC CCGTTTACAG
ACAGAACTGG ACGAAGCCAA TAAGCTGCTA CAAGCTGTTC CCCTGGAAAC CCTGAAAGAA
AAAGATACCC GTCTTGATCA GCAGATAAGA GAAGGCGAAG CCGCGAAAAT CCATTGGGAA
AGACTGTTTG GTAGTCTGCA GGAGAAAGAG AAAACCGCAC GTCAGCTGGA AAACTGTGCA
CAGGAACTGA AAGAAAAGAC AGCCGCACTT CAGGAGAAAC AGGCCGAACT GACCATCGCC
CAGGCAAAAA AGGAGCAGTC AGATAAACTG CTGCATCAGG CACGGTTACA GGTAGCAGAA
AATGTAGAAT CCCTGCGCGC ACAACTGGTG CAGGATGAAC CTTGTCCGGT ATGTGGCAGT
AAAGCGCATC CTTTCGTTAC GGACAATCCG CTGGCACACG CCATGCTGAA AACACTGGAA
GAAGAATACA ATGCTGCTTT AAGGTACTAC AATACGTTAT CAGGCGATAT CAGCAGCCTG
GAGCAATTCT GCAAAAAACT ATTACTTGAC AGCGAAACAT TCAACAAATC CTTACAGGAA
CGAGTGACGC AGATAGCCTC CCTGGAAGAG AAATGGGCGG GGTTTAGTCT GGCAGCTGCC
AGTAAAGCCG CCCCGGATGA AAACAAGGCG CAATGGCTGG AAGAACAGGT GCAGCAATTA
CAGACCGCTC AAAAGGAAAT AGCGGTACAG CTGAAGGCTT ATGACGCGCA AAGGAATGCG
GTTGAAACCC TGAAAAGCCA GCTGGATATA AAACAACAGG CACTGTCTGC AAATAAAGAG
CAGCTGAAAG ACAGGCAACG TGAAAAGACC AGTAAGGAAG AAGCGCAGGA ACGTATTGCC
AGACAACTGG AGCATATAAC GGAAAGTCTC CGGACCATGA CCGAACAACT GGCCCCCCAT
TTCAGCAATC CAGACTGGGT AGATAACTGG AAAAAAGATC CACAGGGATT CAATGCTAAA
ATAGTGGCCT TTGCCCAACA ATGGAAACAA CAGGCAGAAG CTATTATCGC GAATAATCAG
CAGTTACGTG AGCACCAGTC AGCCTTACAG GAAATGGGCA GACAGGGACC GGCCATCGCG
GCTGCATTAA GTGAAAAGAT CAATGCGCTG CAACAGCAGC AAGCGGCGTT TAATGCCCTG
CAACAGGAAC GGCAGGCATT ACTGAACGGA GCGACTGTTA TCAGCTTTGA ACAAAGGTTG
AAACAGGTCA TCGAACAGGC AGTTCTCACA CAGCAGACAG CGACAGAGGT ATTTAATACA
GGAAAAGAAG ATCTGCGGGC CTACACCGCC AGTAAAGACA CCACAACGGC AGATATTACC
AACATTCGCA GTAATATCGA CAAAGAACGG GCTGCCATCG GAGCATGGTT AAAAAACTAT
ACTGCGACCT ATGGCAGCAC GTTGACGGAA GAAACACTCA CGCAACTCCT CTCCCACACG
GCCGCCTGGA TAGAAACAGA AAGAAAGGCG ATCACGGCTC TGCGGGATGC GGTTAATACC
ACCCAGGCTA CCTTGATCGA AAGATCCTTA CAGTTAAGTA ATCACCAGGA AAAGCGCGTA
AGCGATCAAT CCCTGGAAGC ATTAACTGCT TCTTCCAATG AAGCGAAACA GGTACTGGAA
GACCTGGGCA GGGAGAAGAA CAACCTGGCC TACAGGTTAC GGCAGGATGA AGAAAATAAA
CTGAAGATCG GCGACCTGCA ATATACCATC GATGCGAAAA CAGCCGTACA TGAAAACTGG
AGTAAACTAA ATGAACTGAT CGGCTCTGCG GATGGTAAAA AGTTCCGGCA GATCGCACAG
GAATACACCC TGGATATGCT GCTGGATCAT GCCAATATGC ACCTGTCCAT GCTGACCCGC
CGTTATAAGC TATTGAGAAT ACCCGGTAAC CTGGCTTTAC AGGTGCTGGA TAAAGACATG
GGGGATGAAC TAAGGACGGT TTTCTCTCTT TCCGGAGGAG AATCTTTCCT TGTCTCACTG
GCACTGGCAT TAGGATTAGC ATCCCTATCG TCCAGCAAGA TGAAAGTAGA ATCCCTGTTT
ATTGACGAAG GGTTTGGCGC ACTGGATCCT GACACGCTGA ATATTGCGAT GGATGCACTG
GAACGTTTAC ATAATCAGGG CCGTAAGGTG GGGGTGATTT CTCACGTACA GGAAATGACG
GAACGTATTC CCACGCAGAT AAAAGTGATC AGGATGGCCA ATGGAAAAAG CAAGGTGGAA
GTGACTGGGG CTTAA
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| Protein sequence | MKILAIRFKN LASLEDTNEI DFTKEPLSKA GIFAITGPTG AGKSTLLDAL CLALYARTPR
YLQAKETGIE IQDQGGNKIS QGDVRGILRD GTAEGFAEVE FAGVDGNNYK ARWAVKRARN
KIDGNLQADT VELFNLTTNG VFPGKKTETL REIERVVGLN FEQFTRSVLL AQGDFTAFLK
ADKDAKASLL EKLTGTNIYS EISVGIYNKF KEADTELRNL KQQVAGIERL TEEERMALHA
QQEELGAKIS SQQITIAELG AAISWYQLLD TLEKNREQAT DQYQQATLAM ENAGERIRNF
TLVEHVQAAR GPVEARRSHE QQLAEKEKAL QEIDARIMRT TEAQQQAATA LETAHAAVLH
AQQEAAKHQP DITRARELDT LTGEKDRQLQ QAVTEAANAQ KQQDAHLKAF EEKEKEIHTL
AQAISKLEDW QRDHLGRKDI AENIIEISAQ LGHTAKLLPV QQEALKEQQE NASFIRKAQE
QITDLQEKAD KEQAESARLQ TELDEANKLL QAVPLETLKE KDTRLDQQIR EGEAAKIHWE
RLFGSLQEKE KTARQLENCA QELKEKTAAL QEKQAELTIA QAKKEQSDKL LHQARLQVAE
NVESLRAQLV QDEPCPVCGS KAHPFVTDNP LAHAMLKTLE EEYNAALRYY NTLSGDISSL
EQFCKKLLLD SETFNKSLQE RVTQIASLEE KWAGFSLAAA SKAAPDENKA QWLEEQVQQL
QTAQKEIAVQ LKAYDAQRNA VETLKSQLDI KQQALSANKE QLKDRQREKT SKEEAQERIA
RQLEHITESL RTMTEQLAPH FSNPDWVDNW KKDPQGFNAK IVAFAQQWKQ QAEAIIANNQ
QLREHQSALQ EMGRQGPAIA AALSEKINAL QQQQAAFNAL QQERQALLNG ATVISFEQRL
KQVIEQAVLT QQTATEVFNT GKEDLRAYTA SKDTTTADIT NIRSNIDKER AAIGAWLKNY
TATYGSTLTE ETLTQLLSHT AAWIETERKA ITALRDAVNT TQATLIERSL QLSNHQEKRV
SDQSLEALTA SSNEAKQVLE DLGREKNNLA YRLRQDEENK LKIGDLQYTI DAKTAVHENW
SKLNELIGSA DGKKFRQIAQ EYTLDMLLDH ANMHLSMLTR RYKLLRIPGN LALQVLDKDM
GDELRTVFSL SGGESFLVSL ALALGLASLS SSKMKVESLF IDEGFGALDP DTLNIAMDAL
ERLHNQGRKV GVISHVQEMT ERIPTQIKVI RMANGKSKVE VTGA
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