| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4329 |
|---|
| Symbol | |
|---|
| ID | 8360502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5385571 |
|---|
| End bp | 5386530 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644966490 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003123978 |
|---|
| Protein GI | 256423325 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.925614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0225103 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTA TGGAAAGGGT GTCACTAAAC GAACTTGATA AACGCTTTGC CAGCGGCTCC
TCCCTGGAAC TGAATGCGCT GTTGCCAACA GGTATTCAGG ACGAGATTGG TCATTTTAAC
GTATTTAATC TGTTAAACAT CAGACAGGGC GCCCAGGATA AACCCAGTGA ACCCTACCAA
TGCCGGACTT TCTACAAAAT CAGTCTTTTA CAGGGGCATT CACAGATCGG ATATCCGGAT
GGTATTATAC AGCTTTCACA GCCTACACTG GTTTTTACGA CACCTAAAAT GCCTGTTACA
TGGTTTCCGG AGGAACGGCA GTCAGGGATG TTTTGCGTAT TTACACCAGA GTTTTTTCAC
CCGGCGAGAA GTGGCGTAGT AGTGGACGAA CTGCCTATTT ATAAATCACC GGAACATCCT
GTATTTCAAC TACAGAAAGG GGATATCAAA AAAGTAAAAG ACATCTTTGA GAAGATGCAG
ACCATGATCG CGTCTACTTA TGCCTATAAA TATGACCTGC TAAGGGTCTA CGCCCTGGAG
CTTATTCACC TGGGGCAACA ATTACAGTCA ACAGTAATGC TTCATCCGAA TCACAGCCAT
TTTGCACGGA CCACTTCCCT GTTCATTGAG CTGCTGGAAA GGCAATTTCC ATTGGAAAAC
CCCCACCAGC GGATTAAACT GCGTACGGCT AAAGACTACG CGGACATGCT CTCTATACAT
GTCAACCATT TGAATAAAAT ATTAAAGGAA ACCACTGGTC TGACGACATC TGCGCTGATA
GGCGGAAGAA TCCTGAAGGA AGCACAGATT CTCCTGCGGC AGACAAACTG GACGATAGCT
GAAATTGCAG ATAGTTTGGG GTTTTCGGAC TTTGCGCATT TTGCCAAGTT CTTTAAGAGT
GAAACTTCCA TACCTCCCGG TACTTATCGC TCCCAGGCGA AAAGTTTGAA TTATACATAA
|
|---|
| Protein sequence | MKVMERVSLN ELDKRFASGS SLELNALLPT GIQDEIGHFN VFNLLNIRQG AQDKPSEPYQ
CRTFYKISLL QGHSQIGYPD GIIQLSQPTL VFTTPKMPVT WFPEERQSGM FCVFTPEFFH
PARSGVVVDE LPIYKSPEHP VFQLQKGDIK KVKDIFEKMQ TMIASTYAYK YDLLRVYALE
LIHLGQQLQS TVMLHPNHSH FARTTSLFIE LLERQFPLEN PHQRIKLRTA KDYADMLSIH
VNHLNKILKE TTGLTTSALI GGRILKEAQI LLRQTNWTIA EIADSLGFSD FAHFAKFFKS
ETSIPPGTYR SQAKSLNYT
|
|---|
| |