| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4229 |
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| Symbol | |
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| ID | 8360402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5287745 |
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| End bp | 5292328 |
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| Gene Length | 4584 bp |
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| Protein Length | 1527 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644966397 |
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| Product | FG-GAP repeat protein |
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| Protein accession | YP_003123885 |
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| Protein GI | 256423232 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4447] Uncharacterized protein related to plant photosystem II stability/assembly factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.460586 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACATC CCTACCTGAA AACAGTCTTT AAAAGCTTCT TATCCTTTGT TACTATTTAT
GTTTTTTCCC TTTCACCTGC ATATGCTCAA ATGCGACAGA TGTACCTGGA TGCTGATGAA
GATAACAATA TTAAGAAGGT GAGTTTTTAT TCTCCGAATG AGGGATTTGT GGCCTTTTCG
AATTGGATCG GCTATACTAC AGACAGTGGC CGGACATATA CCAAGAAGTT TATTACAGTC
AGGAACGTCG ATTACGGCAG CTATACGAAC ATCAATATAA CTTTTGGGTT TGGTATCGGG
GGCGTGAAAG CCTTCGACAA GAACACCCTT ATCGTATATG GAGATTATGG GCTGGTACCA
TCTATTTTAT ATTCTGTTGA TGGCGGAAAT TCTTTTAAGC TGGTATTCCA TTCACAGTAT
AATCCTTTAC AACTGAGTAC CGGGATAAAG GATATTGTTT TTCCTCAAAA TGGTAATATT
GGCTATGCTG TCGATGCCGA CCGTATTCTG AAGACGACAG ATAAAGGGAT TAACTGGTCA
GTGCAGACAG TGATGTCTGG CAGCTATTTT GACCATATCG AGGCCGTTGA TAACAATAAC
ATCATTACAA TAAGTACCAA CTATTATACA AACAAGTTAT TAAAGACCAG CAATGGAGGA
ACTTCCTGGC AGCAAATGAC ATTGCCTCGA ACGGGCATTC TGACCTATGC GTATTTTCTG
GACGCCAACG TCGGGTGGTT AAGCATGTAT AGCGGGGCAT ACCGCTACTT TTATAAAACA
ACAAATGGGG GCCAGCAATG GACACTTCAG AACGACGTTG AAGCAACTCC CTTCAATTGT
TATAAGATGC GGTTTACCGA TGCCAATACC GGCTATGCGC TGGTAGCGCC TTACCAGGTT
TATAAAACAA CAAACAGCGG CGTAACCTGG GAACCGCTCT CAAGGGAAAA TAATTTCACT
TATCTCGGTT ATTCCCATAA TGATCTGCAG TGTCTTTCCT CAACACAGTT GTGGGCAGGA
GGGGATCATG GGTATCTGGA AATGACGACA AACGGAGGAG GTACTCCAAT AGCCGCTTAT
TTTAAAACAG ACACAACCGG AATGTATATT GCTGGCAATA TTCGCCTGTT AAATTTTTCC
CATACGGGAT CTCAATATCA GTGGCTGGTT AATGGATCTG TGGTAAGCAC CAGTTATAAC
GCACTCTATA CACATGACAT TAGCAGGTAT GTTGATACAG TGCAATTAAT CGTCTCTGCC
GGAGGAGTCT CCGACACCCT CACAAAATAC CCGCGGTTTA ACGCATTGGA ATCTCCCCAA
GTCTCCTCCT ATTATCCAAA ATCGGGTAGT AAAGGCACAT TCGTAACGAT ATCAGGTTCA
AAATTCTCTA ACGTATCTGG TGTTTCGTTT GGTGGTATAC CTGCAGCTTC CTTTACTGTG
TTATCAGATA AAGAGATTAC AGCTGTCGTT GCCGGCGGTG GTACCGGAGC CATCACATTT
AAGCAGCTTT ATAGCAACAT TAAGGTCGGT GAATTCACGT ATAATCCACC ACCAGTTTCA
CCGCCTCCGG TAATTAAGAC CGTCAGTCCC TCTGCGGGCA TGATAGGCTC CACGGTAACA
ATCACCGGTA GTGGCTTTAG TTCAACCGCT TCCCAAAACC AGGTGTTCTT CGGAACTGTT
CCGGCACAGC TACAGACAGT CTCCTCCGGA CAAATCGTAT GTACCGTGCC TGTTGGCGCT
AGTTTAGGAA CTATTCAGGT GCTTAATAAG GACAATGGTC TTTTGGGAGA ATCTTATTCT
CCTTTCAATG TGCCGTTTGC TGACAGCACG GAGAATTTTA CACTTAACTC TTTTAACGAA
GGTCTTATTC TAAATAAAGG CAGAGGAATT CCCATGCGTG TGCAAGGCAG AGATATCGAC
GGAGATGGAA AACCTGATCT GGTTTTAAAT ATGAGCATGG GGCAGGGTGA TTCGCTGGCT
GTTTACCGTA ATACAACGAA AGGAAGGTGG CTTTCCTTTG CACCGAGAGT GAATGTTGGT
TATGTTTATT TCCCTACAGA TGCTGGTTTT GATATAAACG ACCTGGACGG CGACGGCCGC
CCTGACGTCG TGATGCCAAC GAATGAAGCG TTGGTAAAGG TACTCAGGAA TACGAGCAGT
CCGGGCCTTA TTTCGTTTGA CAAGGAATAT CTGGTTCCTG CCGAAAGAGG TACTCAGGAA
GCGGTCATTG CTGATCTCGA CAACGACGGA AAGAATGATA TTGCGGTGAC GTCATTTGAA
GATTATCGCA TATGTGTAAT GAGGAATACG AGCGTGTTGG GCTCCCTCTC TTTTGGTGTT
ACACAAAATT TCGATGCCTC AGAGACAGTA GTAGGGATCG CTGCCGGCGA TCTGGACGGC
GACGGGTTGA AAGATATTAT CGCCTATCCT CACTATAGCA AAAATCCTGG TATTCTGTTG
TATCGGAATA CCAGTATCAG AGGGAATATT TCTCTCGATT CCTATGTTAG AATAAGCGTG
CCGGGCGTCA GTTTTTCGGC CAGCTTTATT ACAATCGTGG ATTTCGATAT GGACGGCAAA
TCAGATATCG TTATTTGCAA TGACGATAAC ATATCCATAC TTCATAATAA CAGTACTTCG
GGACACCTTT CCTTTTCACC CCCTGTTTCC ATGTATTTGC CAGGTAGCAA TGGACATGGC
GGATGTGTGT CAAATTTTAG CGGAAGTATG AAACCGGATG TAATGTCAAC AGCTAACGCA
TTGCCTCGTC AATTCGTCAT GGGAAAGAAT ACTTCCTTGC CTGGTAGTCC TCAACTGGCT
GGTCTCGTAT ACGGACCTAG CTACAACTCG ACCCATATGT TTGCTTATTC ATTTGGAGCT
GCGGATTTTG ACGGAGATGG CAAGCCTGAT CTGGCTGCAT CGACCCTTAG CGATTACCAG
CAAGTTGTTG TGTATAAAAA TAATGTCGGT GTTCCGATAA TCACTCCTAT GTGTACCAGT
AGGGAAGGAG GTAACACGCT GGTGTCCGAT ATCAGCGGAA CGGCATATCA ATGGCAGCAG
GATGCGGGCA GTGGGTTTGC CAATGTTGTT AAAAGTGCAA ACCTGTCCGG CGAAACGACA
AACACCCTGC AATTGGATAG TACACCTGTA TCCTGGAATG GCTATAAATA CCGGTGCGTA
GTCGATGGAC GTTACAGCAG CACCTTTGCA CTGCAACTAA ATTATACCAC TAGTCCTGGC
GTAATCGTTA CAGCTACTGA TACCACTTTC TGTCTTGGAA CAAATGTAAC CTTTGCCGCA
ACTGATTCTA CCGGCTATAA ACATGATTAT CGTTGGCAGT GGCAGATTAA TGGTAAGAAC
ACCGGTTACT TTCTGGACGA TACGCGTACC TTCAATATAC TGGAGGATCT GGACCAGGTG
CGGGTGATTC TCTCGTATAA TGATATTTGC GGCCTCCAAC ATAGCGATAC CAGCAGTACC
ATAACCGTAC ATGTAAACGG CGATACGGCT TCTGTGCAGA TAAGCGCGTC TGACCTAACT
GCCTGTCTGG GAACACCTGT CACATTTACA GCAACGCCTG TGAATCCGGG CAGCCTACCG
GTATATGACT GGAGGATAAA TAATATATCC CAGGGAGTTA GTACTGCGAC ATTTACCAGC
TCAAGCCTGA GAAAAAATGA CTATGTACAT GTATTGATGA AAAGCGCTGC CACTTGTGCA
TATCCAAACC CTGCAAAGAG TAACCTTCTT ACAATGGCGC TAAAGGATAC GATTGCTCCG
TCTGTTAGCA TATGGACCCT AAACCGTACA GTTTGTAACG GAACTGAGGT TTCGTTTCTG
GCAATTCCGG AAAATGCCGG CCCGGTGAAC AACTATCAGT GGATGGTGAA CGGTATTGCT
ACAGGCACGA ACGCAAATGT CTTCCGCAGT TCGATGCTAC AGGACAAGGA CGTCGTTCAA
TGTGTGCTTA CCAGCCCTTC TGTTTGCCGT CGTCAGCCTC AGGCAACCAG CGGTATAATT
ATAATGAACG TAAGCACACC TGATATCAGG ATTTCAGGGG ATACAGTAGT TATTGGAGGT
ATGAAGAGCC AGTTGACAGC TATCACCTCC TATTGGGATA CGGATCTACA GTATCAATGG
CAGGATAGTA CCCATTTGCA TGGTTGGAAG GACATTAGTG ATGCTGTTGG GACTGTGATA
AAGTATGCTC CAGTTAAAAG CGGGGACAAG GTCAGATGTT TGGGCAAGAC CGATGCCGGT
TGCATATTTA CCAGCTATCC AGTTTCCATG AGGATTAGTG TGCCTACGGC TACGCCTGAA
ACGCCTTCAG TCAGTATGGG TTACCGCTGG TATCCCAATC CTGTGAGCTC AACGCTCTAT
ATCCAGGACG AAAACCGACT TGACTGGGTT TCTACAATTA CTGTTTTCAG CACTTTAGGT
ATAAAGGTAA TGGTGATGAA CAATGCCGAT AGAAAGGAAA AGATCGCCCT CAATGTATCA
GCCTTACCAA GCGGTGTGTA TTTTGTGGAA ACGAAAAGGA AATCAGGTAA AACGAGACAT
TTTGAGTTTC TGAAGATACA GTAG
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| Protein sequence | MQHPYLKTVF KSFLSFVTIY VFSLSPAYAQ MRQMYLDADE DNNIKKVSFY SPNEGFVAFS
NWIGYTTDSG RTYTKKFITV RNVDYGSYTN INITFGFGIG GVKAFDKNTL IVYGDYGLVP
SILYSVDGGN SFKLVFHSQY NPLQLSTGIK DIVFPQNGNI GYAVDADRIL KTTDKGINWS
VQTVMSGSYF DHIEAVDNNN IITISTNYYT NKLLKTSNGG TSWQQMTLPR TGILTYAYFL
DANVGWLSMY SGAYRYFYKT TNGGQQWTLQ NDVEATPFNC YKMRFTDANT GYALVAPYQV
YKTTNSGVTW EPLSRENNFT YLGYSHNDLQ CLSSTQLWAG GDHGYLEMTT NGGGTPIAAY
FKTDTTGMYI AGNIRLLNFS HTGSQYQWLV NGSVVSTSYN ALYTHDISRY VDTVQLIVSA
GGVSDTLTKY PRFNALESPQ VSSYYPKSGS KGTFVTISGS KFSNVSGVSF GGIPAASFTV
LSDKEITAVV AGGGTGAITF KQLYSNIKVG EFTYNPPPVS PPPVIKTVSP SAGMIGSTVT
ITGSGFSSTA SQNQVFFGTV PAQLQTVSSG QIVCTVPVGA SLGTIQVLNK DNGLLGESYS
PFNVPFADST ENFTLNSFNE GLILNKGRGI PMRVQGRDID GDGKPDLVLN MSMGQGDSLA
VYRNTTKGRW LSFAPRVNVG YVYFPTDAGF DINDLDGDGR PDVVMPTNEA LVKVLRNTSS
PGLISFDKEY LVPAERGTQE AVIADLDNDG KNDIAVTSFE DYRICVMRNT SVLGSLSFGV
TQNFDASETV VGIAAGDLDG DGLKDIIAYP HYSKNPGILL YRNTSIRGNI SLDSYVRISV
PGVSFSASFI TIVDFDMDGK SDIVICNDDN ISILHNNSTS GHLSFSPPVS MYLPGSNGHG
GCVSNFSGSM KPDVMSTANA LPRQFVMGKN TSLPGSPQLA GLVYGPSYNS THMFAYSFGA
ADFDGDGKPD LAASTLSDYQ QVVVYKNNVG VPIITPMCTS REGGNTLVSD ISGTAYQWQQ
DAGSGFANVV KSANLSGETT NTLQLDSTPV SWNGYKYRCV VDGRYSSTFA LQLNYTTSPG
VIVTATDTTF CLGTNVTFAA TDSTGYKHDY RWQWQINGKN TGYFLDDTRT FNILEDLDQV
RVILSYNDIC GLQHSDTSST ITVHVNGDTA SVQISASDLT ACLGTPVTFT ATPVNPGSLP
VYDWRINNIS QGVSTATFTS SSLRKNDYVH VLMKSAATCA YPNPAKSNLL TMALKDTIAP
SVSIWTLNRT VCNGTEVSFL AIPENAGPVN NYQWMVNGIA TGTNANVFRS SMLQDKDVVQ
CVLTSPSVCR RQPQATSGII IMNVSTPDIR ISGDTVVIGG MKSQLTAITS YWDTDLQYQW
QDSTHLHGWK DISDAVGTVI KYAPVKSGDK VRCLGKTDAG CIFTSYPVSM RISVPTATPE
TPSVSMGYRW YPNPVSSTLY IQDENRLDWV STITVFSTLG IKVMVMNNAD RKEKIALNVS
ALPSGVYFVE TKRKSGKTRH FEFLKIQ
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