| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4146 |
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| Symbol | |
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| ID | 8360319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5170759 |
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| End bp | 5173644 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966317 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003123806 |
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| Protein GI | 256423153 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0960595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.432652 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTTTC TTTTTAAGCA GAAAACAACA CAGGTAATAT CGCCGGCAAG ACTAATATTA
TTGTCAGCCA TGGTATTGCC AGCGATGTTT ACAAATGCAC AGACTATTAA AGGAACCGTG
TCAGGTAAAG AAGGACAGTT ACCTGGCGCA TCCGTACAAA GTCCTGCTAC AAGACAAAGC
ACCTCTACTG ACCTGAACGG AAGTTTTACA CTCAACACAC ATACAACAGG CAAAGTAAAG
GTCCTGGTAT CTTATATAGG ACATACATCA GAAGAAATAG AACTCGATGT TAAAAACGGT
ATCAATGATG CCGGTGTGAT CATACTGACA CCTACTGAAG GCCAATTGGG TGAGGTACTG
GTAAAAGGTA CAATGGCGCC GTCCCAGATC AAAGCCCTGA GTATCAAAAA GAACTCCCTC
GCAATAATGG ACGTGATCGC GGCAGATGCG ATTGGTAAAT TACCCGATCG TAATGCCGCG
GAAGCGGTAC AACGCGTACA GGGTGTCGCC GTCGCCCGCT ACCACGGAGA AGCAGATGCC
GCGACAGTAA GAGGAACGCC TTTCGCCTGG ACATCTACCA TGTTCAATGG CAGCCGCCTG
CCGAGCGCCA ACGTAACTGG CGGACGGAAC TCTGTCCTGG ATGCTGTTCC TTCCGAAATG
ATCCAGTATG TACAGGTTGC CAAAGCCCTG ACACCTGATA TGGAAGGCGA CGCTATTGGT
GGCAGTATTA ACTTCATTAC CCGCACCGCT CCGGCAAAAA GACAGTTGAA TGTCAGCGCT
GCCGGCGGTT ACAATACCTT CTCTCAGAAT GGCACCTACA ATGGTTCTGT CGTATACGGT
GACCGTTTCT TTAAAGGTAA ACTGGGTGTA ATGGTAGCCG GCGCAATCTG GGACAGACAA
TGGGGAACCG ATTCTTATGA TATCGCGTAC AATACCGGTC TGACCGATCC TACCCAGCAG
AAATCCATCA GTACCGTGAT GCTGAAAAGA TATATGGGCC GTCGCCAGAC TTATGGCGGT
AATGTAGGAC TGGAATATAA ATTCAACACC AGCAATAAGA TCTATTTCCG TGGACTGATG
GATAAATTTA ACGATATCCG TCCTGTATAT GAATCTTATG TTGACTATAA TAACAGCCGT
TATCAGTATA ACTACCGTTA CTCTTACTAC CAGACCACAT TAAACGGTGC AGAATTAGGT
GGTGAGCATC AGCTGTCTTC CCGCATAAAA ATGGACTGGG CAGTGAGCGA CTATTACACT
AAATTCTTCC TGGAAACACC TCCGACAAAC AACAATAAAG GCTTACCTAT TGCTACCTTC
CGCCAGAAAA TCAACGGTGG ATTCAATAAT CTCTCTTCAG ACGGCAAACG TTACTGGGGA
TTTGACTCAC CAGATGGCAT TGGCGGAGAT CCCCTGCATT TTGACGCTGG TTTAAAAGAT
CCTTCAGAAG TAATGGATGC CTCCAAACTG ACTTTACAAC AGCTGGTCAT CTCTCAGCTG
GATACCAAAG AGCATGACAA AACCGCACAG CTGAATTTCA AAGTGAATGT TGCTACTAAG
GTGAACCTGA AATTCGGTGG TAAATACCGA CATAAGGACC GCACGTCTAC TTTCGGCTCC
AATATCGTGT ACCTGCCGGG GGCAGCCCTG GGTATCCCCA ATTCGCCTGC TTTGCTGACA
CTTTCCCAGT TACAGCGAAC AGCTTTCCCG GAAAAAGCGG GTTTCTTTAC AAAACTGAAG
AGCAATCATG ATAATCTGAT GATGGACCCT ATCACCAAGG AGCAACTCCT CAATCTGTAC
GACCCGGCGA CCTTGAAAGC CAATGGTTTC GGTGACTATA CCTCCGCTTC TAACGCAACT
AATATCTATA CCGGCACAGA AAACGTAGCC GCTGGTTATG CGATGGCAGA AATAGATGCT
ACTGACAAAC TAAAGATCGT GGCCGGTGTG CGAAATGAGT ATACATCATT GAACATGCAG
GGTTCCAAAG CGACCAAAGA TGCTACAAGT GGCGCTACTA ATATCAGTGA CGTAGAAGTG
AAAAACAACT ACAATGCGCT GTTACCGATG TTGCACCTGA AATACGCGCT CAATGATCAT
GCAAACCTGC GTGCAGCTTA TACCCGTACT TTTATCCGTC CAAACTTTAC CGACCTGACA
CCAGGTGAGT CGATCGATAA TTCAAAATCA CCTGTAACCA TCACCAGGGG AAATCCTGCT
TTGAAACCAA CCTTCTCCAG CAATTTCGAT GTAATGGGAG AATATTACTT CAATAACATC
GGTTTGTTAT CCGGAGGAGT ATTCTACAAA CAGATCAAAG ACGTGATCTT CTCTGACAGA
ACCACGTATT CTGAGAATGG CGGCAGTTAT GTACTGACGC AGGCAAGGAA CCTGAATGAT
GCTAAACTCT TTGGTTTTGA AGGCGGTATC AATAAACGCC TGAGTTTCCT GCCTGGTATC
CTTGCTGGTC TGGGCGTAGA ATTCAACTAC ACCTATATCC ACTCTGAAGT GGAAGTACCA
AGAACCGGTA CTGGTCTGTC GGACAAAACA AGTCTTCCCA ACCAGTCTAA AAACATCTTC
AACAGCATCC TGTTTTACGA ACGTAATGGC ATCATGGTAC GTCTGGCGGG CAACTACCGC
GGCGCTTCCG TAGAAACGAT CAATCAGGCG GCAGGTAAGG ACTTCTATGT ATGGACAGAC
AAGAACTTCA CCATCGACGC TTCTGCAACA GTCAACATCA CTAAAAGCCT GCGCGTTTTC
GTAGAGCTGA ATAACCTGAC CAATGAACCC CTCAGATTAT ACATGGGCGA CAAACGCCGT
GTAACCTCGA CAGAGTGGTA TGGTAGCCGC GGGCAGGCAG GTATTCGTTG GGATATTATC
AAATAA
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| Protein sequence | MYFLFKQKTT QVISPARLIL LSAMVLPAMF TNAQTIKGTV SGKEGQLPGA SVQSPATRQS
TSTDLNGSFT LNTHTTGKVK VLVSYIGHTS EEIELDVKNG INDAGVIILT PTEGQLGEVL
VKGTMAPSQI KALSIKKNSL AIMDVIAADA IGKLPDRNAA EAVQRVQGVA VARYHGEADA
ATVRGTPFAW TSTMFNGSRL PSANVTGGRN SVLDAVPSEM IQYVQVAKAL TPDMEGDAIG
GSINFITRTA PAKRQLNVSA AGGYNTFSQN GTYNGSVVYG DRFFKGKLGV MVAGAIWDRQ
WGTDSYDIAY NTGLTDPTQQ KSISTVMLKR YMGRRQTYGG NVGLEYKFNT SNKIYFRGLM
DKFNDIRPVY ESYVDYNNSR YQYNYRYSYY QTTLNGAELG GEHQLSSRIK MDWAVSDYYT
KFFLETPPTN NNKGLPIATF RQKINGGFNN LSSDGKRYWG FDSPDGIGGD PLHFDAGLKD
PSEVMDASKL TLQQLVISQL DTKEHDKTAQ LNFKVNVATK VNLKFGGKYR HKDRTSTFGS
NIVYLPGAAL GIPNSPALLT LSQLQRTAFP EKAGFFTKLK SNHDNLMMDP ITKEQLLNLY
DPATLKANGF GDYTSASNAT NIYTGTENVA AGYAMAEIDA TDKLKIVAGV RNEYTSLNMQ
GSKATKDATS GATNISDVEV KNNYNALLPM LHLKYALNDH ANLRAAYTRT FIRPNFTDLT
PGESIDNSKS PVTITRGNPA LKPTFSSNFD VMGEYYFNNI GLLSGGVFYK QIKDVIFSDR
TTYSENGGSY VLTQARNLND AKLFGFEGGI NKRLSFLPGI LAGLGVEFNY TYIHSEVEVP
RTGTGLSDKT SLPNQSKNIF NSILFYERNG IMVRLAGNYR GASVETINQA AGKDFYVWTD
KNFTIDASAT VNITKSLRVF VELNNLTNEP LRLYMGDKRR VTSTEWYGSR GQAGIRWDII
K
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