| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1588 |
|---|
| Symbol | |
|---|
| ID | 8357730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1930963 |
|---|
| End bp | 1931976 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644963768 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003121285 |
|---|
| Protein GI | 256420632 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.313513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAACG AAGAATTATT TACCACGTTA GCCGCCAGGA AACTGGCAGG AGAAGCTACC
ACAGCAGAAT TGCTGGAGCT TGACGGCATG TTGCAGGAAT ATCCTGAACT CCGCGAAAGC
TATCAGCTGC TGCAACAGTA CTTCAAAGTG TCCTCATATC ATTCATCTGC CGATACAGAA
CTGGCGCTGC AACGCACCCT GTCCCGGATA TCCGTTCCTG TCAGCAATGC GCCTGTAAGG
AAAATGTTCC CGTGGAAATG GGTGGGTGTC GCCGCTGCTG CTGCTGTATT GATCGGCATC
GTTTCGTTTG TGGTACTCAG GCCAAAAGAT CATCCGGTTG AAATGGTGAA ACTGATGGAA
AGACAGAATG GTAAAGCTAC CAGGGCCTCT ATCGAACTCG CTGATGGCAG TAAGATCTGG
CTCAATGCGG AAAGTAAACT GTCTTATCCG GAAGTGTTCG ACGGTAATAC GCGTGAAGTA
TATCTCACCG GGGAAGCTTT TTTTGATATA GCGCCCAATC CGAAGAAACC TTTCATCGTA
CATTTCAACG CCGGTAGCGT CCACGTACTC GGTACTTCCT TCAATGTACG CGCTTATGAA
AATGAGGCGG TACAAACGTC TGTAAGAACA GGTAAAGTAG CATTCATCCC TAACCGTAAA
CAGGGTGAAA AGCCTGATAC TATCTTTATT ACACCGGATG AGAAAGTAAC CTTACAAACC
ATTGTTGCAG ATATAAAGAG CAACGGCATT GTGAAAGAAA TTACTTCCTC CGAAGAAGAT
AAAGCGTGGA CAGAAGGAAG ACTCATATTC CGGGATGAAA CACTGGAAGA CATTGCATCC
GAACTGGAAA GAACGTTCGG TAAGAAAGTG ACCTTTGCTA ATGATGCTCC ACGTTATTAC
AGACTCACAG GCGCTTTCCA GGATAACAGC CTGCAGGATA TCATGTATTA TCTAGCCAGG
TCAAAAGCAT TCCACTATAC CATCACTGAT AGCACGTTAC TGATCACAGA ATAA
|
|---|
| Protein sequence | MINEELFTTL AARKLAGEAT TAELLELDGM LQEYPELRES YQLLQQYFKV SSYHSSADTE
LALQRTLSRI SVPVSNAPVR KMFPWKWVGV AAAAAVLIGI VSFVVLRPKD HPVEMVKLME
RQNGKATRAS IELADGSKIW LNAESKLSYP EVFDGNTREV YLTGEAFFDI APNPKKPFIV
HFNAGSVHVL GTSFNVRAYE NEAVQTSVRT GKVAFIPNRK QGEKPDTIFI TPDEKVTLQT
IVADIKSNGI VKEITSSEED KAWTEGRLIF RDETLEDIAS ELERTFGKKV TFANDAPRYY
RLTGAFQDNS LQDIMYYLAR SKAFHYTITD STLLITE
|
|---|
| |