Gene Cpin_1166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1166 
Symbol 
ID8357282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1389638 
End bp1390276 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content49% 
IMG OID644963322 
Productvon Willebrand factor type A 
Protein accessionYP_003120865 
Protein GI256420212 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAGAT TACCAGTTTA TTTAGTGTTG GATACCTCTG GCTCTATGAG CGGTGAGCCC 
ATAGAAGCTG TGAAAAATGG TGTACAGGTA CTGATCTCTA CCCTGAGACA GGATCCGTAT
GCCCTGGAAA CTGCATTCCT CAGCCTGATC ACTTTTGACA GTGATGCGCG CCAGCTGGTG
CCGCTTACAG ATCTGTCTTC TTTCCAGATG CCTGAATTAA AGGCTTCAGG CGGTACCTCT
CTGGGTTCCG CGCTGGAACT GGTGGCTGAC AGTATCAACA GGGAAGTAGC AAAATCTACT
CCTGACGTAA AAGGTGACTG GAAACCGCTG GTTTTCCTGA TGACAGATGG TATTCCCACC
GATACATGGC AGAACGGATT GAATGCCTTT CAGAATACCA AAATAGGTAT TACAGTAGCC
TGTGCCGCGG GCAATGGCGC TGATGTGAAC CTGTTGAAGC AGATCACCAA TACCGTTGTT
TCACTCGATA CGGCAGATGC CGCTACGATC AAAGCCTTCT TCAAATGGGT GTCTGCCTCC
GTAAGCACCG GCAGCCAGAA AGTAGAAAGC GGCGATAAAG AAGTAGCCGG ACTGAATGAA
TTGCCACCGC CTCCACCGGA AGTGAATATC GTCGTGTAA
 
Protein sequence
MRRLPVYLVL DTSGSMSGEP IEAVKNGVQV LISTLRQDPY ALETAFLSLI TFDSDARQLV 
PLTDLSSFQM PELKASGGTS LGSALELVAD SINREVAKST PDVKGDWKPL VFLMTDGIPT
DTWQNGLNAF QNTKIGITVA CAAGNGADVN LLKQITNTVV SLDTADAATI KAFFKWVSAS
VSTGSQKVES GDKEVAGLNE LPPPPPEVNI VV