| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0386 |
|---|
| Symbol | |
|---|
| ID | 8356492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 462175 |
|---|
| End bp | 462606 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644962533 |
|---|
| Product | large conductance mechanosensitive channel protein |
|---|
| Protein accession | YP_003120086 |
|---|
| Protein GI | 256419433 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1970] Large-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.242536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCT TCAAAGAGTT TAAAGAGTTT GCCACGAAAG GAAATGTAAT GGATCTGGCT
GTCGGTGTGA TCATTGGTGG TGCATTCCAG AAGATCGTTA CTTCACTGGT TGATAATATC
TTTATGCCAG TGTTGGGGAT TGTCACTGGT GGTATTAATT TCAAAGACAA GTTCTGGCTG
TTGAATACAA GTAAGGGTAC CGATTTCCCT TCATTGGAAA AGGCGAAGGA AGCGGGTGCA
CCAGTATTTG CCTATGGTGC ATTTGTACAA AGTATCATTG ATTTCATACT GATCGCTTTC
TGTATATTCC TGCTCGTGAA ATTCATGAAC AGTATGCGTA AGAAGAAAGA AGCAGCACCA
GCAGCCCCAC CAGCGCCAAC AAATGAAGAA AAGCTGCTCA TGGAGATCCG TGATGCACTG
AAGAATAAAT AA
|
|---|
| Protein sequence | MSFFKEFKEF ATKGNVMDLA VGVIIGGAFQ KIVTSLVDNI FMPVLGIVTG GINFKDKFWL
LNTSKGTDFP SLEKAKEAGA PVFAYGAFVQ SIIDFILIAF CIFLLVKFMN SMRKKKEAAP
AAPPAPTNEE KLLMEIRDAL KNK
|
|---|
| |