| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3051 |
|---|
| Symbol | |
|---|
| ID | 5743377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3731415 |
|---|
| End bp | 3732554 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641294152 |
|---|
| Product | carboxynorspermidine decarboxylase |
|---|
| Protein accession | YP_001560147 |
|---|
| Protein GI | 160881179 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA TCGACTTTAG TCAAATTCCA ACCCCCTCCT ATGTTGTAGA GGAGCGATTA
CTAAAACGAA ACTTATCCTT ATTAAAAAGT ATTATGGACC AAACTGGTTG TAAAATACTA
TTAGCACAAA AGGCATTTTC CATGTTTTAT TATTATCCGT TGATTGGATC TTACCTAGCA
GGTACTACAG CTAGTTCTTT ATTTGAAGCA AGGCTTGGGA AAGAAGAAAT GGGAGGAGAA
GTGCATATCT TTAATCCTGC CTATCAAGAA TCTGAGATGG AGCAAATCAT CTCTCTGTGT
GATCATATTG TATTTAATAC ACCGAAACAA TGGCTTAAAT ATAAAGAAGT AATACAAAAA
TCAGGAAAAA AGGTAAGCTG TGGATTAAGA GTGAATCCAC AATACTCAGA AATCGAGGTA
GATTTATATA ATCCTTGTGC AAAGGGTTCA AGATTAGGTA CAATCCTTGA TAATATACAG
GAAGAGGATT TAGAAGGATT GGAAGGATTG CATTTTCATA CCATGTGTGA GCAAAATTCA
GATGTCCTAG TTCGAACCTT AAAAGTCGTG GAAGAAAAGT TTAGCTTCCT ATTAAAAAAG
ATGAAGTGGA TAAACTTTGG TGGAGGGCAT CATATCACAA GAGAAGATTA CGATGTGGAG
AGTCTGATTT CTTCTATACT TCATATGAAA GAGACTTATG GAATAGAAGT CTATCTAGAA
CCTGGAGAAG CAATTGGCTT AAATACGGGA TACCTGGTTA CTAAGGTATT AGATGTTTGT
GGTGAGCATG GAGAATGCGC CATATTAGAT ACTTCTGCTG AATGTCATAT GCCTGACGTT
CTTGAAATGC CATATCGCCC AGAAATTATA GGAGCTGGTA AAGCCGGAGA AAAAGCTTAT
ACTTATCGCC TTGGGGGACC TACCTGTCTG GCAGGGGATG TTGTGGGAGA GTATTCTTTT
GATGAGCCAT TAAAAGAAGG GGATATATTA GTCTTCTGCG ATATGTCTCA TTACAGCATG
GTGAAAAATA ATACCTTTAA CGGAATCAAC CTACCTTCTA TCGTTGCATA CACAGAAAAA
GAAGGAATTG TAATTGTCAA ACAATTTGGC TATGAAGACT TTAAAATGAG GTTATCATAA
|
|---|
| Protein sequence | MKEIDFSQIP TPSYVVEERL LKRNLSLLKS IMDQTGCKIL LAQKAFSMFY YYPLIGSYLA
GTTASSLFEA RLGKEEMGGE VHIFNPAYQE SEMEQIISLC DHIVFNTPKQ WLKYKEVIQK
SGKKVSCGLR VNPQYSEIEV DLYNPCAKGS RLGTILDNIQ EEDLEGLEGL HFHTMCEQNS
DVLVRTLKVV EEKFSFLLKK MKWINFGGGH HITREDYDVE SLISSILHMK ETYGIEVYLE
PGEAIGLNTG YLVTKVLDVC GEHGECAILD TSAECHMPDV LEMPYRPEII GAGKAGEKAY
TYRLGGPTCL AGDVVGEYSF DEPLKEGDIL VFCDMSHYSM VKNNTFNGIN LPSIVAYTEK
EGIVIVKQFG YEDFKMRLS
|
|---|
| |