| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1904 |
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| Symbol | |
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| ID | 8368362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 2291798 |
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| End bp | 2293216 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644984356 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_003142010 |
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| Protein GI | 256820731 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAGAG AGAATTCGTT ATATATAAAT GATACGATTG TAGCTTTGGC AACTGCTTCA
GGGGTCGGTG CTATTGCTGT AATTCGCCTA TCGGGAAAAG AAGCCATAAC CATAGCCGAC
TCGGTGTTTA AGCCTCATAG TGGAAAATCT TTACTTGAAG CTCCGTCACA TACAGTTCAT
TTAGGAACTC TCGAAAGTAA AGACCAAGTA ATCGACGAGT GTTTGGCTAC TATTTTCAAA
GGAACTAAAT CTTATACAGG TGAGCCCGTA GTTGAGTTTT CGTGTCACGG AAGTAATTAT
ATCGTAGAAG AAGTTATCAA GCTGTGCTTG GCAAAAGGAG CTCGTTTAGC CGATGCTGGG
GAGTTTACCA AACGTGCTTT TCTCAATGGC AAATTAGCAC TCAATCAAGC GGAAGCCGTT
GCCGATTTGA TTGCCTCCGA TAGTAAGGCT TCTCATCAGG TAGCATTACA GCAAATGCGA
GGTGGGTTTA CTTCTGAGAT AGAAGGATTA CGACAAGAAT TATTGAACTT TACCTCATTA
ATAGAACTTG AATTAGACTT TTCGGAAGAA GATGTAGAGT TCGCCGATAG AACTCAGTTT
AAAACACTTT TGAGCACTAT TAAAACCATA GTTTTATCTC TCTTACAATC ATTTTCAGTA
GGTAATGTAC TAAAAAATGG TATTCCTGTC GCTATTGTAG GCAAGCCTAA TGCAGGCAAA
TCTACTTTAT TAAATGCCCT TCTGAACGAA GAACGCGCTA TTGTATCGGA TATTGCAGGT
ACTACCCGCG ATACTATTGA AGAAACGCTT CATATAGGAG GTATTGCTTT TCGTTTTATT
GATACCGCAG GAATTCGTGA TACTCAAGAC CAAATCGAAG CTATAGGTGT ACAAAAAGCT
AAAGAAAAGA TAGAAAAAGC CTCTATTGTG CTCTACTTAT TCGATGTAAA AGATAGTTCT
GCCCAAGAGA TTATTTCTTT TGTAAAAGAA AATTACCGCG AAGGAACTAA ATTTGTACTA
TTACACAACA AAACTGACTT ATCAACAGAA AGTAATATAA CTCCTTTTGA TAATGAGATT
TTACAATCCT TGCAAGGCTA TACTGATACA CTACTGAGAA TATCAGCTAA AGAAGGAAAC
AATATTTTAG CCCTTAAAGA TTTTCTCTCT CACTATGCTC AAAGTCTTAA TAATACAGGT
AAAGCAACTA TTATTACTAA TATCCGCCAC TACGAAGCTC TACACAATAC CTTACAAAGT
ATTGAAAGAA TAGAACAAGG AATACAATTA CAACTTTCAG GTGACCTATT AGCTATCGAT
ATCCGCGAAG CTCTCTATCA TTTAGGTTCT ATCACAGGAA CTGTAAGCAA TGATGAGGTC
TTAGGAAACA TCTTTTCCCG CTTCTGTATC GGCAAATAA
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| Protein sequence | MKRENSLYIN DTIVALATAS GVGAIAVIRL SGKEAITIAD SVFKPHSGKS LLEAPSHTVH
LGTLESKDQV IDECLATIFK GTKSYTGEPV VEFSCHGSNY IVEEVIKLCL AKGARLADAG
EFTKRAFLNG KLALNQAEAV ADLIASDSKA SHQVALQQMR GGFTSEIEGL RQELLNFTSL
IELELDFSEE DVEFADRTQF KTLLSTIKTI VLSLLQSFSV GNVLKNGIPV AIVGKPNAGK
STLLNALLNE ERAIVSDIAG TTRDTIEETL HIGGIAFRFI DTAGIRDTQD QIEAIGVQKA
KEKIEKASIV LYLFDVKDSS AQEIISFVKE NYREGTKFVL LHNKTDLSTE SNITPFDNEI
LQSLQGYTDT LLRISAKEGN NILALKDFLS HYAQSLNNTG KATIITNIRH YEALHNTLQS
IERIEQGIQL QLSGDLLAID IREALYHLGS ITGTVSNDEV LGNIFSRFCI GK
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