| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0171 |
|---|
| Symbol | |
|---|
| ID | 5709029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 201167 |
|---|
| End bp | 202513 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641274674 |
|---|
| Product | Alpha-amylase |
|---|
| Protein accession | YP_001540010 |
|---|
| Protein GI | 159040758 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.400898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.121411 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAAA ACATCGTATT CTTCATGGAG ATGCATCAAC CTAGGAGACT TAATAGGCTT
CTTCATTATC AATCCTCAAT GGAACCCCTT GACCTTTTAT TCGATGATGA ACTTGATAAG
CTTATTTTAA GTAGGATTGC AGCTAGATCC TACAGTAAGG TTCTTGATAT TATTAAGGAG
GCTAATAGGG AATACGGCTA CAGGTTTGCG ATTAGTATAA CTGGGGTATT GGTTGAACAG
TTGAGGAAAT GGGCCCCGGA GGTTTTAGGG AAGTTAATTA ACTTAATTAA TGATGATGCC
GCTGAGCCAG TGGCTGAAAC CTATTACCAC TCCTTAGCTT ACTTAATTGA TGAAGCTGAA
TTCAGGGAGC AGGTTATGAT GCATGTTAAT TTAATTGAGA AGTTAACCGG GAAGAGACCT
GTTACTGTGC AGAATACTGA ATTCATGTAT AGTGATGATG TTGGTAGGGT GTTTTCAGAA
ATGGGGTTTA AGGTAGCCTT AACCGAGGGT GTGGAGAGGG TTCTTGGGTT TAGGCAGCCA
ACTTACCTTT ACAAGAGCCC AAGCGGCTTA CTGCTCCTGC TTAGGCATTA TAGGCTTTCC
GATGATGTTG GTTTCAGGTT TACGAATAAG TCATGGGACC AGTACCCGTT AACTGCCGAT
AAGTACGTTG CTTGGTTAAG GGCGACATGG GGTGATTTAG TAATGATTGG GTTAGACATG
GAGACCTTCG GTGAACACAT GCCTGAGGAG TCGGGAATAT TTGAGTTCCT GAGGTGGATG
TTTAGGCATG CTTATGAATC AGGCATAAGG TTCATAGCGC CAAGTGAGGT TAAGGGGTAC
GTGTCATCAT CATATGAACT TAACGTTAAT GAAGTAATAT CGTGGGCTGA TGCTGAGAAG
GATACCTCAG CGTGGATTGG CAATGAAATG CAGTGGACGT CGTTTAACCA AGTGGCTATG
CTTCACGGTT TAGTTAAGGA GCTTGGTGAT GAGTATCTGA GGAATTACGT TAGGTTACTC
ATGGTTAGTG ACCACTTCTA CTACATGTCA ACTAAACATG GTGCACCTCA GGATGTTCAC
AATTACTTTA ACCCATACTA CAGCCCCTAT AGAGCCTTTA CCCTGCATCA ATCCGCGGTG
CATAGGGTAC TTAGCTACAT GGCTAGGACG CATGGTAATG CCTCAGTTAT TAGGCATTTA
GCCAGGATTA AACTACCCAG TGAGTTAGCT ACCTGGGTTA GGGGTGAGTC ATTTAGTAAG
GCTCAATGCA CCAATGCCCA ATACACGGCT AGGCTTATGA CTATTAATCA CCCTAAGTTA
ACTGAAGCCT GCAGTAAATC AAGCTAA
|
|---|
| Protein sequence | MVKNIVFFME MHQPRRLNRL LHYQSSMEPL DLLFDDELDK LILSRIAARS YSKVLDIIKE
ANREYGYRFA ISITGVLVEQ LRKWAPEVLG KLINLINDDA AEPVAETYYH SLAYLIDEAE
FREQVMMHVN LIEKLTGKRP VTVQNTEFMY SDDVGRVFSE MGFKVALTEG VERVLGFRQP
TYLYKSPSGL LLLLRHYRLS DDVGFRFTNK SWDQYPLTAD KYVAWLRATW GDLVMIGLDM
ETFGEHMPEE SGIFEFLRWM FRHAYESGIR FIAPSEVKGY VSSSYELNVN EVISWADAEK
DTSAWIGNEM QWTSFNQVAM LHGLVKELGD EYLRNYVRLL MVSDHFYYMS TKHGAPQDVH
NYFNPYYSPY RAFTLHQSAV HRVLSYMART HGNASVIRHL ARIKLPSELA TWVRGESFSK
AQCTNAQYTA RLMTINHPKL TEACSKSS
|
|---|
| |