| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0482 |
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| Symbol | |
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| ID | 6354477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | + |
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| Start bp | 544723 |
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| End bp | 547098 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642668113 |
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| Product | ribonuclease R |
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| Protein accession | YP_001942554 |
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| Protein GI | 189346025 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAAGAC AGCGTTATAA TCGCAAACCC GGAAGTTCCG GAAAAAAGAA CAGCAGGCCG
TCAGCCGTTC AGAACGGAGA CAGGGTCAGG CCCAATGATC ATATTCTTAT CAATGAGTTT
CTTTTCAGGC GAGGTGAGAG TTCCCTTGCT GCTGAAATCG TAAGCTTTTT AACGGATCAC
GATGGAGAAC GGTTCAGATC GGTAGATCTT GCCAGGAAAA TGGGTTATAC GGAATCCATA
CAATTGCCGG GATTCTGGTA TGTGCTTCAT AAACTGCAGG AGGACGGGAC CGTTGACAAG
GATTCGAACC GCGCGTACGG GATGCAGGGC ATGGAGCCGG CAACCTATGA AGAGGTTCTT
GAGCATACAC GGCAGTTTCC ATTGCCGGGC AAGGAGCAGT TCAAGGTGGA TCAAACCTAT
GTCGGACGAC TGATAACCCA TCCTAACGGT TACGGTTTTG TCGATGTAGA AGGTTTTGAT
GACGATATTT TTGTCAAGGC CGGTGATCTT AATTCGGCGA TTCATGGTGA CGAGATAGAA
GTTGTCGTAA CAAAAGTGCC TGAAACGTAT TCGGCAAAAT CCACTCCTCA TCAGCGGTGC
GAAGGAATTG TGGTCAATGT CGTGACCAGG AAAATATCTG CCATTGTAGG TACGCTAAGC
CGCGAAAACC GGAAGTTCGT TCTCAAGGCT GACGACCGGA AACTGCTTCC TGAAATAATT
GTTCCGATCA AACAGGCTTC AGGCGCAAAA GATGGTGAGA AAGTGCTTGT TGGCGATCTC
GATTTTCGAA AGCCGGGTAT TATCCAGGCG CGTGTGCTTG AAATTCTGGG TTCGGCCGGC
GACTCACGGG TCGAGGTAAG CGCGATTGCC CGCAACCACG GTATCGATGA AACGTTTGAT
GAAGAGTTGA TCAACTTTGC GGGAGCAATT AAGGAAGGCA TTACCGATGA TGATCTGAAG
AACAGACTCG ATATTCGCGA TAAAAATGTC TTTACCATCG ATCCTGTGGA TGCGAAAGAT
TTTGATGACG CTCTTTCAAT CGAGACACTG GATGACAATC TCTACCGGAT CGGTGTGCAT
ATTGCCGATG TTTCTCACTA TGTCCCTGAA AATTCGCCGC TTGACCGGGA AGCCATGAAA
CGGGCAACCT CGGTCTATCT TGTGGATCGG GTTATTCCCA TGCTTCCTTC GCGATTGTCG
GAGCAGGTCT GCAGTCTCAA CCCGGGTGTG GACAGAATGG CGTTCAGTGT GTTTATAACC
ATGACGGAGA GCGGAGAGGT ACGGGAACAT GCGTTTCATA AAACGGTTAT TCATTCGAAG
CGCCGCTATA CTTATGAGGA TGTTCAGGAG ATTTTGCTGA AGGGCGAGGG GGATAATGCT
GCCGAGCTGC AGCTTCTTGA AAAGATCAGC GTTCAATTGC GTGAGGAGCG CTTCCGTCAT
GGCGGCCTCG ACTTTGAAAC CGAAGAGGTT CGTTTCAGGC TTGGCAGCAA GGGTGAACCT
GTCGAAGTCA TCAAGAAGGA GCGTCTTTCA AGCCATCGGC TTATCGAGGA GTTTATGCTG
CTCGCCAACC GAAAGGTTGC CGAGTACCTT ACAAAAACCT TTCGTGAACG TAAAAAAAAT
CCGCAGCCGG TCATTTATCG GGTTCATGAC GCGCCTCAGC AGGAGAGGGT GCTTGTGCTT
GCAAATTTTG TCAGAAAGAT CGGCTATACC CTTAAAATCA ACAGGGAGAA GACGGGCCCC
ATAGTAAGCG CAAAAGCGCT TCGTCAGCTT CTGCAGCAGG TTCATGGTTC AAACGTTGAA
TTTCTGGTAA ACGAGCTTGT GCTTCGCTGC ATGTCCAAAG CGATTTACAC CGATGAGAAC
ACCGGTCATT TCGGGCTTGG ATTTGAGCAT TATACCCATT TCACTTCGCC GATTCGCCGC
TATCCCGATC TTATCGTCCA CCGGTTGCTT TTCGAATATG AAAACCTTCG CAACAGGAAG
AAAAAAATAA CCGACAAACG ACTTGCCGAG CTGTCGGAGA AGATCAGAGT AACGAGCCGT
ATTTCAAACG AGCGGGAGAA AAGTGCGGTC GAGGCTGAAC GGGAGTCTAT CAAGCTCAAG
CAGGTCGAGT ATATGGCCGG TCATCTCGGC AATGTTTATC AGGGGATCAT TTCAGGCGCA
ACCGAGTATG GCATCTATGT GAGAATGGTT GATTTTGCCA TAGAGGGCCT TGTGCATATG
CGGAACCTGA CCGATGATTA CTACGAATAC GATGAAGCGA CCTATTCACT GATCGGTAAA
CGCCGAAAGA GAAGGCTGCA GATAGGTCAG CGGGTCAAGG TCAAGGTGCA TATGGTGGAT
ATGCAGAGAC GTACTATCGA TCTCGTTATC GAGTAG
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| Protein sequence | MARQRYNRKP GSSGKKNSRP SAVQNGDRVR PNDHILINEF LFRRGESSLA AEIVSFLTDH
DGERFRSVDL ARKMGYTESI QLPGFWYVLH KLQEDGTVDK DSNRAYGMQG MEPATYEEVL
EHTRQFPLPG KEQFKVDQTY VGRLITHPNG YGFVDVEGFD DDIFVKAGDL NSAIHGDEIE
VVVTKVPETY SAKSTPHQRC EGIVVNVVTR KISAIVGTLS RENRKFVLKA DDRKLLPEII
VPIKQASGAK DGEKVLVGDL DFRKPGIIQA RVLEILGSAG DSRVEVSAIA RNHGIDETFD
EELINFAGAI KEGITDDDLK NRLDIRDKNV FTIDPVDAKD FDDALSIETL DDNLYRIGVH
IADVSHYVPE NSPLDREAMK RATSVYLVDR VIPMLPSRLS EQVCSLNPGV DRMAFSVFIT
MTESGEVREH AFHKTVIHSK RRYTYEDVQE ILLKGEGDNA AELQLLEKIS VQLREERFRH
GGLDFETEEV RFRLGSKGEP VEVIKKERLS SHRLIEEFML LANRKVAEYL TKTFRERKKN
PQPVIYRVHD APQQERVLVL ANFVRKIGYT LKINREKTGP IVSAKALRQL LQQVHGSNVE
FLVNELVLRC MSKAIYTDEN TGHFGLGFEH YTHFTSPIRR YPDLIVHRLL FEYENLRNRK
KKITDKRLAE LSEKIRVTSR ISNEREKSAV EAERESIKLK QVEYMAGHLG NVYQGIISGA
TEYGIYVRMV DFAIEGLVHM RNLTDDYYEY DEATYSLIGK RRKRRLQIGQ RVKVKVHMVD
MQRRTIDLVI E
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