| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7808 |
|---|
| Symbol | |
|---|
| ID | 8339184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 9056226 |
|---|
| End bp | 9059630 |
|---|
| Gene Length | 3405 bp |
|---|
| Protein Length | 1134 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644960892 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_003118473 |
|---|
| Protein GI | 256396909 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTATCGCT CGGGTATACC CGCCGGCAAA GGACTCGAAA CCTTGTTCGA CACGCAGGCC
CCGGCCCAGG TCAGCGGACC CCCGCTGGAC CCGGCGCAGC GCCGCGTCGT CGATCACCCC
GGCGGGCCGC TGCTGGTGCT GGCCGGGCCC GGCACGGGGA AGACGCACAC GCTGGTCGAG
GCCGTCATCT CCAAGACTGA TCCTGATCGC GCGGCGCTGC GCCCCGATCA GGTGCTGATC
CTCACCTTCA GCCGCAAGGC CGCCTCCGAA CTGCGTGACC GCATCGGCCG GCGGCTGCCG
CTGTCCGGCG TCGCGCCTCT GGCGACCACG TTCCACTCCT TCTGTTACGC GCTGGTCCGC
CGCTTCCAGG ACCCCGAGCT GTTCACCGAG CCGATCCGGC TGCTCTCCGG ACCCGAACAA
GACGTGTTCG TCCGCGATTT GGTCTCCGGC AGCATCGACG TAGGGATAGG TGGTGGTGCG
CTCGGCGAGC GCATCCAGTG GCCGCAAGAC TTGCGCGCGG CGCTCGCGAC CCGTGGCTTC
GCCGAGGAAC TGCGGACCGT GCTCGCCCGC GCGCGGGAAC TCGGGTTGGA CCCGACCGAG
CTGGCGCAGG CCGCGCGGCG CGCCGATCGC GGCGACTGGT ACGCCGCCTC GGCGTTCTTC
GAGGAGTACC TCGACGTGCT CGACGTCCAG GGCGTCCTGG ACTACGGCGA GCTGGTGCAC
CGCGCCGTGC TGCTGGCCGG GCAGGAGGAC GTGCGCCGCG AGCTGCGCCA CGACTTCCGC
GCGGTGTTCG TGGACGAATA CCAGGACACC GACCCCTCGC AGGTGCGGCT GCTGCAGGCG
CTCGCCGGGG ACGGCGCGGA CCTGGTGGTC TTCGGCGACC CCGACCAGTC CATCTACCAG
TTCCGCGGCG CGGACGTGCG GGGCATCCTC GACTTCCCCG AGGCGTTCCG GCGCATGGAC
GGGAGCCCGG CCGACACCGC GGTGCTGCGC ACGTCGCGCC GCTGCGGACC GGCGCTGCTG
AAGGCCTCGC GCGACCTGAC CCGGCGCATG CCGATCCCGC TGCTGCCGAC GGAGAAGGTG
CGCGAGCACC GGGATCTGGC GGCGGAGGGC CCGGTGGCCG ACGGCGAGCC GATCGAGGGC
TCGGTCCAGG TCTTCACCTT CCCGACGCCG AACACCGAGC TCGACAACAT CGTGGACATG
GTGCGGCGCG CGCACCTGGA GGACGGCGTC CCGTGGGACG AGATCGCCGT GCTGGTCCGC
TCCGCGACCC GGTCGATCCC GGCGCTGCGG CGCGCGCTGA TCGCGGCCGG CGTGCCGGTC
GACACCTCCG GCGACGAGCT GCCGCTGGCC GCCGAGCCCG CGGTCGCCGT GCTGCTCCAG
GCGCTGCGGG TGGCGGACAA CGAGGCCGCG CTGACGCCGG ACGTGGCGCG GGCCCTGCTG
TCCGGACCGC TCGGCGGCAT GGACGCGTTC GAACTCCGCA AGCTGGCCCG CGCACTGCGC
GCCGAGGAGC GCGCCGCGAA CCAGAACGGG GTGCGGGGTG TCCCCGCAGA GCACAGTGCT
GTCGTGCCAG AACTCGCGCG GATCACCGAG CCCAGCGTCA ACGGCGTCCG CCCGAGCGAG
GTCCTGCTCC GCGAGGCGCT GGCCGAGCCG GCGCGCCTGG TCGCCATGGA CGAGGACGTC
GCCGAACCGG CCCGGCGGCT CGGCATGCTC CTGCTGCGCA CCCGCCAGAT CCTGCGCGGC
GGCGGCTCGG TCGAGCGCGC GCTGTGGGAG CTGTGGAGCG GCGGCGGGGA CGAGCGCGAC
CGCAACCGCG CGCACCGCTG GCCCGAGCGG CTGGAGCGCA CCGCGCAGCG CGGCGGCAAC
ACCGGCCGCG CCGCCGACCG CGACCTGGAC GCGGTGTGCG TGCTCTTCGA CTACGCGGCC
CGCGCCGAGG ACCGCGCGAC CGGCCGCGGC GTCCGCAACT TCATCGCCGA CCTGGAAGCG
CAGGAGCTGG CCGGCGACTC GATGGCGGCG CAGTCCTCGC GCGGCGGCGC GGTGCGCTTG
ATGAGCGCGC ACAAGTCCAA GGGCTTGCAG TGGCGCTTCG TGATCGTCGC CGGGGTGCAG
GACGGTCTGT GGCCGGACCT GCGCCTGCGC GGTTCGCTGC TCCAGGCCGA CCTGATCGGC
CGTAACGGTT TACGGTCCAT GGAGGAGATC CCGACGGCGT CGACGCTTCT CGCGGAGGAG
CGCCGGCTGT TCTATGTGGC CGCCACCCGG GCTCGCGAGC GGCTGGTGGT CACCGCCGTC
GACAGCGCCC TGATCGGCGA CGACGCGGCG GCCGAGGCGC CCTCGCGGTT CGTGTACGAA
CTCGGCGTCG AGGTGCAGCC GCTGCCCGGG CTGCGCAAGC GCGCCCTGGC GATCCCGGCC
CTGGTCGCCG ACCTGCGCCG GGTCCTGACC GACCCGAAGA GCTCCGACCA GCTGCGGCAG
GCCGCCGCCG AGCGGCTGGC CCGGCTGGCC GACGCGCAGG CCGGGGACGG CCGGCCGCTG
GTGCCCTCGG CACACCCGGA CAAGTGGTGG GGTCTGGTCG AGGAGACCGC CTCCGAGCAG
CCGGTGCGCG ACCCGGCCAA GCCGCTGCTG CTCTCGGCCA GCCAGGTCGC GGCCATAGAC
GAGTGCTCGC TGCGCTGGTT CCTGGACCAC GAGGCCGCCG CCCACGAGCA GAAGACCGTC
GCCCTCGGCT TCGGCAACGT GGTGCACGTC CTCGCCGACG AGGTGGCCAA GGGCGACACT
CCGGCGCGCC TCGACGTGCT GATGGAGCGC CTGGACCGGG TCTGGGACCG GCTGTCCTTC
GAAGCACAGT GGCAGTCCCC TCAACAGAAG GAAGAGGCGC GCGCGGCTCT GGAGCGCTTC
CTGGCTTGGC ACGTCACCGA CCGCGGCCGG CTGCTGCACT CCTCGGAGCA GGAGTTCGAC
GTGCGGCTCA ACGTCGGCGC CGGGGACAGC GAGGACGGCG AGGGCTTCGA CCTGCGCATC
CGCGGGTCCT TCGACCGGGT GGAGACCGAC GAGGCCGGGC TGGTCTACGT CGTCGATTTC
AAGACCGGCA AGAATGTGCC GACCAAGAAC GAGGCCCAGG AGCACCCGCA GCTCGCGGTC
TACCAGCTGG TGGTCCGCGA GGGCGCGATA CAGGGCGTCT CGAACGAGTC CGGCGGCGCC
GAGCTGGTGT TCCTGCGCGA GGGCGACGCC GCGGGGCTCC CCAAGACCGC CGAGCAGGAC
CCCTCGCTGG AGCTGCCCGG CGAGACGCCG ATCGAGAAGA AGCTCGCGAC GATGGCGGCG
CGGGTCCTGG ACGAGAACTT CGCCGCGTAC GGCGAGAAAC AGTGCGGTAC CTGCGTCTTC
CGCAAGTGCT GCCCGAAACA GCCCGAGGGA AAGCAACTCC TTTGA
|
|---|
| Protein sequence | MYRSGIPAGK GLETLFDTQA PAQVSGPPLD PAQRRVVDHP GGPLLVLAGP GTGKTHTLVE
AVISKTDPDR AALRPDQVLI LTFSRKAASE LRDRIGRRLP LSGVAPLATT FHSFCYALVR
RFQDPELFTE PIRLLSGPEQ DVFVRDLVSG SIDVGIGGGA LGERIQWPQD LRAALATRGF
AEELRTVLAR ARELGLDPTE LAQAARRADR GDWYAASAFF EEYLDVLDVQ GVLDYGELVH
RAVLLAGQED VRRELRHDFR AVFVDEYQDT DPSQVRLLQA LAGDGADLVV FGDPDQSIYQ
FRGADVRGIL DFPEAFRRMD GSPADTAVLR TSRRCGPALL KASRDLTRRM PIPLLPTEKV
REHRDLAAEG PVADGEPIEG SVQVFTFPTP NTELDNIVDM VRRAHLEDGV PWDEIAVLVR
SATRSIPALR RALIAAGVPV DTSGDELPLA AEPAVAVLLQ ALRVADNEAA LTPDVARALL
SGPLGGMDAF ELRKLARALR AEERAANQNG VRGVPAEHSA VVPELARITE PSVNGVRPSE
VLLREALAEP ARLVAMDEDV AEPARRLGML LLRTRQILRG GGSVERALWE LWSGGGDERD
RNRAHRWPER LERTAQRGGN TGRAADRDLD AVCVLFDYAA RAEDRATGRG VRNFIADLEA
QELAGDSMAA QSSRGGAVRL MSAHKSKGLQ WRFVIVAGVQ DGLWPDLRLR GSLLQADLIG
RNGLRSMEEI PTASTLLAEE RRLFYVAATR ARERLVVTAV DSALIGDDAA AEAPSRFVYE
LGVEVQPLPG LRKRALAIPA LVADLRRVLT DPKSSDQLRQ AAAERLARLA DAQAGDGRPL
VPSAHPDKWW GLVEETASEQ PVRDPAKPLL LSASQVAAID ECSLRWFLDH EAAAHEQKTV
ALGFGNVVHV LADEVAKGDT PARLDVLMER LDRVWDRLSF EAQWQSPQQK EEARAALERF
LAWHVTDRGR LLHSSEQEFD VRLNVGAGDS EDGEGFDLRI RGSFDRVETD EAGLVYVVDF
KTGKNVPTKN EAQEHPQLAV YQLVVREGAI QGVSNESGGA ELVFLREGDA AGLPKTAEQD
PSLELPGETP IEKKLATMAA RVLDENFAAY GEKQCGTCVF RKCCPKQPEG KQLL
|
|---|
| |