| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6054 |
|---|
| Symbol | |
|---|
| ID | 8337417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 6976641 |
|---|
| End bp | 6977918 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644959158 |
|---|
| Product | Platelet-activating factor acetylhydrolase plasma/intracellular isoform II |
|---|
| Protein accession | YP_003116752 |
|---|
| Protein GI | 256395188 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.679959 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CACCGTTCCC CGCCCGCCGC CGACCCAACC GCCGGACCCT GCTGGGCGCC
ACGATGGCCG CCGGGGTCGC GGTCCCGTTG GGCCTGGCCG GCCGGGCTTC GGCGGCCACG
GCGGACGCCG CGAAGACGAA TACGACCACG AATACGAATA CGCACCCGAC CGCCCCGAGC
CCGGCCGGCA CGAAGACCAC CGCGCCCCCG GCGCACCTGT TCATCCCGCC GCCGACCGGC
CCGTACCAAG TCGGCACGGT CGACCTGCAC CTGCTCGACA CCTCGCGCCC CGACCCGCTG
AACCCGGGCC AGTCCTACCC GCTGATGGCC AGCATCTGGT ACCCGGCGCG GGACGCCGAC
CGCTACCCGG TCGCGCCCTG GATGACCACC GGCACGTTCC AGGCCTGGCT CGCCGACGCC
GGCTTCGACC CGGCCAGCCT GCCGGTCCCC GCCACCGCCG GGCATCTCGG CGCGCCGGTG
CGCCGCGGCG GGCGCCCGCG CCCGGTGATC CTGTTCTCCC ACGGCGCGCA CGACCACCGC
TCGGATGCGA CGACCGTCGT GCAGGAGCTC GTCAGCCACG GCTACATCGT GGCCACCGTG
GACCACACCT ACGACGCGTT CACGCAGTTC CCGGGCGGGC CGGTCCTGTC ACCGGCCGGC
AGCGCGAACG TCCCGGAGTC CCCGAGCGAC TTCGCCGCCG ACGCCCGGTT CCTGCTGGAC
CAGATCCACG CCATCGCCGC CGGCCGCAAC CCCGACGTGG ATCGCCATCC GCTGCCCGAC
GGCCTGCCGG GCAGCCTGGA CCTGGACCGG ATCGGCATGT TCGGCTGGTC CAAGGGCGGC
ACCGCGACCG CCCTGGCGAC CCTGGCCGAC GACCGGATCC GCGCCGGGCT GGCCTTCGAC
GGCCCGATGG AGCCGACGAT CACCACCGAC CTGGCCAAGC CCTTCATGAT GATGAGCGCG
GTGTTCACCC GGGACGCCGA CCCCGACGCG CAAGAGTTCT GGACGCACCT CAAGGGTTGG
CGCCGCTACT TCCAGCTCAA CGGCGCCGAA CACATCGCGT TCAGCGACGC CGAAGGGCTG
ATCCTGCCGG TGGCGAAGAT CCTCGGGCTG AGCCAGGACA CGGTGCAGGG CCTGGTGGGG
ACCATGGACC CGAACGAGGG CGTGCGCGTC CAGCAGGCAT ACCCGCTCGC CTTCTTCGAC
CTGCACCTGC GGAACCGTCC GAGCCGGCTG CTGGACGGGC CGTCGCCGCA GTTCCCGGAC
GTGCAGTTCA TGTCCTGA
|
|---|
| Protein sequence | MTTTPFPARR RPNRRTLLGA TMAAGVAVPL GLAGRASAAT ADAAKTNTTT NTNTHPTAPS
PAGTKTTAPP AHLFIPPPTG PYQVGTVDLH LLDTSRPDPL NPGQSYPLMA SIWYPARDAD
RYPVAPWMTT GTFQAWLADA GFDPASLPVP ATAGHLGAPV RRGGRPRPVI LFSHGAHDHR
SDATTVVQEL VSHGYIVATV DHTYDAFTQF PGGPVLSPAG SANVPESPSD FAADARFLLD
QIHAIAAGRN PDVDRHPLPD GLPGSLDLDR IGMFGWSKGG TATALATLAD DRIRAGLAFD
GPMEPTITTD LAKPFMMMSA VFTRDADPDA QEFWTHLKGW RRYFQLNGAE HIAFSDAEGL
ILPVAKILGL SQDTVQGLVG TMDPNEGVRV QQAYPLAFFD LHLRNRPSRL LDGPSPQFPD
VQFMS
|
|---|
| |