| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5878 |
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| Symbol | |
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| ID | 8337239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 6786131 |
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| End bp | 6787456 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644958982 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_003116577 |
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| Protein GI | 256395013 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.464013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCACAC CCCCGATCCG CATCGTGATC GCCGACGACC ACCTGGTGGT ACGAACCGGC
TTCGCAGCAC TGCTGGCAAC GCAAGCAGAC TTCGAGGTCG TAGGCACGGC AGCCGACGGC
GAGGAAACCG TACGGCTATG CCGAGAGGCG GAACCCGACG TGGTCCTGAT GGACGTGCGA
ATGCCCGGCA CAGACGGCAT CGAGGCAACA CGGCGAGTCG TGGCAGAGGC CACCCACCGA
GGCGTCCAAG GACCCAGAAT CCTCATCCTC ACCACCTTCG ACCTCGACAG CTACGTCTAC
GACGCCCTCT CCGCCGGCGC CAGCGGCTTC CTCCTCAAAG ACGCCACAGC CGAACGCCTC
TTCGAGGCAG TACGAGTAGT AGCCGCCGGC GAAGCACTAC TGGCCCCAGC AGTAACACGC
CGCCTGATCA GCGAGTTCGC GCGCCTGCGG CCCGGGATCG GCGCGAGTTC AGGCTCAGGG
TCGGCAAGTG ACGCAGCGGG CCCAGGCTCA AGCTCGGCGG GCGTGGGCAT GGGCTCGGCA
AGCAGCGCAG CGGGCTCGCG CTCAGGCTCG GCAAGCGGTG CGGCAGGCGC GGGTTCGGGG
TCGGGGTCGG CGGGCGGCGT GGCGGGCACA GGCTCGGCAA GCGGCAAAGC GGCAGGCCCA
GGCTCCACAG GCGGCGCAGC GAGCGCAGGC TCAAACTCGG CGGGCGCGGG CATGGGCTCG
GCAAGCAGCG CAGCGGGCTC GCATTCAGGC TCGGCAAGCG GCCAAGCGGC AGGCTCAGGC
TCTACAGGCA GCACCCCAGC TTCGAGTCCA GGGTTGGCGG GCGGCATGGC AGGCGCAGGC
TTGGCGCGCG GCGGGGCGGG TTCGCGCTCA GGCTCGGCAG GCGGCGCGCG TTCAGGATCG
GCGGGCGGCG CGGCAGGCTC AGGCTCGGCA GGAGCTGGCT TGGCGAGCGG CGCGGCAGGC
TCGGCCAGGT CAGCGTCAGC GGCACCGGGC AGATCCGCGC TCGGCGCGGC AGCTGGATCC
GGAGCCGCGG CGCCGTCGGC TCAGCACAGT GGGCACTCGC GCGCGGGGGC GGCTTTGCCC
GGGCAGGGTT TTTCCGCCCT CACTCCTCGC GAGACCGAGG TGCTGCTGCT TATCGCGCGC
GGGTTGTCGA ATCCGGAGAT CGCGGCGGAG TTGGTGGTCA CTGATGAGAC TGTGAAGACC
CATGTCAGCA GGGTGCTGAC CAAGCTGGGG TTGCGGGATC GGACTCAGGC TGTGGTGGCG
GCGTATGAGT CTGGGTTGGT GGTGCCGGGG GGCGAGAGTC AGGAACGTCC GCCGAATCGC
CACTGA
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| Protein sequence | MTTPPIRIVI ADDHLVVRTG FAALLATQAD FEVVGTAADG EETVRLCREA EPDVVLMDVR
MPGTDGIEAT RRVVAEATHR GVQGPRILIL TTFDLDSYVY DALSAGASGF LLKDATAERL
FEAVRVVAAG EALLAPAVTR RLISEFARLR PGIGASSGSG SASDAAGPGS SSAGVGMGSA
SSAAGSRSGS ASGAAGAGSG SGSAGGVAGT GSASGKAAGP GSTGGAASAG SNSAGAGMGS
ASSAAGSHSG SASGQAAGSG STGSTPASSP GLAGGMAGAG LARGGAGSRS GSAGGARSGS
AGGAAGSGSA GAGLASGAAG SARSASAAPG RSALGAAAGS GAAAPSAQHS GHSRAGAALP
GQGFSALTPR ETEVLLLIAR GLSNPEIAAE LVVTDETVKT HVSRVLTKLG LRDRTQAVVA
AYESGLVVPG GESQERPPNR H
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