Gene Caci_5197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5197 
Symbol 
ID8336551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp5973492 
End bp5974127 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content72% 
IMG OID644958295 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003115897 
Protein GI256394333 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.128867 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATCCCG ACACCCTGCC CGCACCGTTG CCGCGCGGCA ACCACGGCCT GAGCCGCGAG 
GAGGTCAGCG CGGCGCAACG CACGCGGCTC CTGAACGGGA TGCTGGAGGT CGTGGCCGAG 
CGCGGGTACG CCGCGGCGAC GGTCGGCGCG GTGCTGTCGC GGGCCCGCAT CTCCCGCCAG 
ACGTTCTACG AGCACTTCAC CGACAAGCAG GACTGCTTCC TGGCCGCCTT CGACCGCTCG 
GCGGACCGCT TCGCCCTGCT CATCGAGCAC TCCCTCGGCT CCCCGAAGGA CCCGGCGCTG 
CAACGCCTGG ACCGCATCAT CGAGGCCTAC CTGGGAGCCC TGGCCGCCAA CCCGACCCTG 
GCCCGCATCT TCATGATCGA GATCTACGCC GCCGGCTACC CCGCCGTCTC CCGCCGCCTG 
GCCCGCGCCG AAGCCTTCGC CGCGATCCTG GCCGAAGCCG TCACCATCGG CCGCCCCTGG 
CGCGGCGGCC TGGACCCGCT GTTCGTGGCG CGCGCCGTCA CCGGAGCCGT CAGCGGCCTG 
GTGACCGAGC AGATCAACGC CGGGGAGATC AAGTCGCTGC CGGAACTGCG GCCGCAGATC 
GTCGCGTTCG TGGCGGGGTT GTCGGCGGAA GACTGA
 
Protein sequence
MDPDTLPAPL PRGNHGLSRE EVSAAQRTRL LNGMLEVVAE RGYAAATVGA VLSRARISRQ 
TFYEHFTDKQ DCFLAAFDRS ADRFALLIEH SLGSPKDPAL QRLDRIIEAY LGALAANPTL 
ARIFMIEIYA AGYPAVSRRL ARAEAFAAIL AEAVTIGRPW RGGLDPLFVA RAVTGAVSGL 
VTEQINAGEI KSLPELRPQI VAFVAGLSAE D