Gene Caci_5108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5108 
Symbol 
ID8336462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5866793 
End bp5867485 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content71% 
IMG OID644958206 
ProductB3/4 domain protein 
Protein accessionYP_003115808 
Protein GI256394244 
COG category[S] Function unknown 
COG ID[COG3382] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.809424 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACTTCC AGCACGCCCC AGCCATCCGG TCCGCCCATC CCGGCCTGGC CGCCACGGCG 
ATCACCGCCG CCGGCATCAC CGCGGACGCC GACGTCGAGG AACAGGTCGC CCGCTTCACG
GCGATCGCGA ACGCCCGGCT CGCCGGCGGC GCCGAATCCG ACCTCGCCGA GATCAAGGCC
TGGCGCCAGG CGTTCTCGAC GATGGGACTC AAGCCCACGC AGTACCGCTG CGCCTCCGAA
GCCCTGCTGC GCCGCCTGCG CAAGGAAGGC GAACTCCCCC GCATCCACCC GCTGATCGAC
CTGTGCAACG CGGTCTCGGT CGCCTTCGCG ATCCCGGTCG CAGCCCTCGA CCTCGACCAG
ATCTCCGGCG ACCTCGAAGT CCGCCCCGCC ATCGGCGACG AGGTCTACCA CACCTTCGGC
GGCACGACCG AGAACCCCGA GCCGGGCGAG GTGATCTTCG CCGACTCCGA GAACACCTCC
CACGCGCGCC GCTGGACCAA CCGGCAGAGC GGGCTGTCGG CGGTGCGCGC GCAGACCTCG
CGGGTCCTGA TCGTCGCCGA GGCGCTGCAC GAGTCAGCCG CCGAGGACAT CAGTGCCCTG
ATGAAGACGC TGGTCGAGGA GCTGACGGCG GTGTGGCGGG TGACGCCGGT GTCCGCGGTG
CTGAGTCAGG AAGCACCGCG GTTCACCGTC TGA
 
Protein sequence
MYFQHAPAIR SAHPGLAATA ITAAGITADA DVEEQVARFT AIANARLAGG AESDLAEIKA 
WRQAFSTMGL KPTQYRCASE ALLRRLRKEG ELPRIHPLID LCNAVSVAFA IPVAALDLDQ
ISGDLEVRPA IGDEVYHTFG GTTENPEPGE VIFADSENTS HARRWTNRQS GLSAVRAQTS
RVLIVAEALH ESAAEDISAL MKTLVEELTA VWRVTPVSAV LSQEAPRFTV