| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0229 |
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| Symbol | |
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| ID | 8331555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 255268 |
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| End bp | 258165 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644953395 |
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| Product | TIR protein |
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| Protein accession | YP_003111023 |
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| Protein GI | 256389459 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0105613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.178125 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCGC CGGTGCGGGA CGGCGGCGAG AACGAAGCCG TATACGACGT CTTCTTCAGT
TACTCGTGGA AGAACTTGGC CGAGGCGTTG ATACTCGTCG CAGCCTTGGA GGCGCGACGT
TTGCAGGTCT TCCGCGACGA GACCGGCATG CGGGACTTCG ACGACATCGG CACGGAAGTG
TTCGCCGCGC TCGCTGGATC TCGCAGTTTT GTGGCGCTCT ATACGCCCCA GTTCCCGGAG
AGCGCATACT GCCGGCTGGA ACTCGCTCAC GCGATGACCG CGGCGTATCG CCTCGACGGC
GACGTGCGCC GAATCCTCCC CGTTGTCAGG GAGCTGCCCT ACGAAGCCGT TCGGCCGCGG
GCGCTGCAGG ACAAGCGACT TCCCGCGCGT TCCACCGGCC CGGATGCACT CGCCGCGGTG
GTCGCAGAGC GATTGGAGGA GATCGACGAC AGGCCGTTCG GGATCGCCTC TGAGCCTGGG
CCGCCGAATT GGTATCCGTT TCCGACCGTC GCGGAACCTG CCTTTCACGG CCGTGCGACA
GAGCTGTGGG ATCTGCACGA CGCGTTGGCC GGACGGGATG ACGCGGCACA GCCGGGGCAG
CGGCTGGCGC GCATCGTGGG CATGGGTGGC CAGGGCAAGA CGATGCTTGC CGAGCAGTAC
GCGCGATGGT TCGCAGCGGA CCATCCTGGT GGGGTCTTCG TTCTGCGGGG ATTCGGTAGT
CACCGAAATG CGAACAGCTC ACCTGCCTTG CTCAGGACAG CGCTCGAACA GCAGCTGGCA
CGGATCGCCG AGGAGTTGCC GGGGGTGCCG GCCGAGGTCG AAGGACGTTC GGCTGATCGC
TCGGCGCGGT CGGTGATTCG GGACCACCTG GAGAGGGCCG ACCAGGACTA CCTTTGGATC
GTCGACGATC TGCCGGATCA TGTCGGGCCG ATCGGTGTTC GCGAGTTCCT CGCTCCGACG
GCTCGCGGGC GCACGCTTGT CACATCACGC CACGCGCATC GTGGATTCGT CGGCGAGACA
GTCGAGCTGG GGCCACTCGG CGAGTCTGCG GCGGTGAGGA TTTTGCTGGG AGGCGCCGGC
GCGAGGGCTG ATCGGGCGAC GATCGCTTCG GCGCGTCGGC TTGCGGCCGA TCTCGGTCAC
CACGCCATGG CGGTCGCGCT GGTCGCCCGA ACACTGGACA ATAACGGGAC AGCTGAGCTC
GACCAGGTTC GCACAGAACT GGCCGACCCC GATCGCGACG CACTCGAGTG GGCGGCGGCG
CGGGAGCACG AGATCGCCAC GGACCATCAA GGCAGTGTGG CGGCGGCGAT GATGCGGTCG
CTGGCGAGGC TTTCGTCGGC GGCATATGAG GTATTGCTGC TGGCAAGCAT TCTTGCGGCC
GCACCCGTTC CTGCGGCGAT GTTCGACAGC GTACTCGGCG ACAGTCGGCG GCTCGACAGC
ACACGTCCGG GGATGACGGT TGACGACGCG CTTCGAGAGT GCGCCGCACT GGCGTTGGCC
ACGGTGACGG TAGGCACGTT CGGGACCTTG TGGAGCGTGC ATTCACTGGT GAGCCGTGCG
GTGCGGTTCC GCGACCGGTT CGGCAGCGGC GACCGTGAGC AGCTGCGGGC CAGGTCCGTC
GAGGCGCTCG GGGAGATTCT CGAGCGCGGG CGGGACGGCA TCGTGGACTA TTTGCCGCAC
GTGCGTGCCG TCGCCGGTGG CGCGACCGAC GTGGCCCAGC AGAGCCTGCT GAACGAGGCG
GGACGCGTCC AGGTCGGCCT CGGCGACGAG CGGGCCGCGC TGGCGATGTT CGAGCGGCTC
TATCAGGCGT GCCGGGAGTC ACTCGGCGAG GACGATTTCG CCACGCAGGC AGGGCTGGTG
GGTCTCGGCG TCGCCTACGG CCTGCTAGGT CAGCACGAGC TCGCACTGGA CTTCAAGACG
CGTGCCTATG AGGTGCTCGC GCGCGTCGAG GGCGCGGATG AGGAAGCGAC GCTGACCGCC
CTGAACAACG TGGCTGTCAC ATTCGGCGAG CTCGGCGACT ATGCGAAGGC CCGAGTACTC
CACCGGCAGA TCTATGCCAC CCATCTCAAG CGCCGCGGGC CTTCGCACCC CGCGACGCTC
GCTTCGTTGA ACGCGTACGC GACGGCTCGC GAGCTTGATG GACACGAGAG TCTGGCGTTG
CGTCTCAGGA CGAGGGTCGT TGCGGCGAGT CGGCGGTATC TGAGGCCTGA TGACCCGCAG
CTCGCCGACG CGATCAGCTC GCTCGCCGTC AGCCATTATC GAGCGGGGAA TTCGGCCGCC
GCGCGCGCAT TGTTCCAGGA GGCCTACGAC GTGCGCAGAG CCATCTACGG ACCTTCTCAC
CCCGACGCTC TCAGCGCTCT CGAGTTCGCC GCCGTTTGCG CGGACCCTGA GGCCCGGACT
GCTGAACTCC GCGCCGTGTA TCGCAAGCGT GTCACCCACG CCGATCCCGG CTCTCCTGCC
GCCCGTCGCA CCCTGCGGAA CCTGATCATC AACCTGCGGA GCGTCCACGT ATCCACCGCC
AACCCTCCAT CAGACTCCGT GAACCGTGTC TTCTCGGAGC CGGTTCAAGA ACCTCCTGGT
GATTGGACGG AGGTCGCGGT CCGACTCGAC GACGAAACGA CCGACGAGCG TGTCGAGGAC
TTCGAACTCG CTTCGTACCT GCACGGAGCA CTGGTCGCGG AGTTCGGCAC AGACCACCCC
GAGACTCTCT TCGCCGAGAC GTGTCTCGGC CACGCGACCG TCTGCCTGGG CCAGCTGGAC
AGTCAGATCG ATGACGGTCT GAACGTGCTG CGCGACGCCG CCGAAGGCAT GCGGGTCGTG
CTCGGTTGCC CCGAAGCGGA CCTGGCCGTG GTGGACCGAC TCATCGACTG GGCAGAACGG
CTGGCGTTCG ACGACTGA
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| Protein sequence | MTAPVRDGGE NEAVYDVFFS YSWKNLAEAL ILVAALEARR LQVFRDETGM RDFDDIGTEV
FAALAGSRSF VALYTPQFPE SAYCRLELAH AMTAAYRLDG DVRRILPVVR ELPYEAVRPR
ALQDKRLPAR STGPDALAAV VAERLEEIDD RPFGIASEPG PPNWYPFPTV AEPAFHGRAT
ELWDLHDALA GRDDAAQPGQ RLARIVGMGG QGKTMLAEQY ARWFAADHPG GVFVLRGFGS
HRNANSSPAL LRTALEQQLA RIAEELPGVP AEVEGRSADR SARSVIRDHL ERADQDYLWI
VDDLPDHVGP IGVREFLAPT ARGRTLVTSR HAHRGFVGET VELGPLGESA AVRILLGGAG
ARADRATIAS ARRLAADLGH HAMAVALVAR TLDNNGTAEL DQVRTELADP DRDALEWAAA
REHEIATDHQ GSVAAAMMRS LARLSSAAYE VLLLASILAA APVPAAMFDS VLGDSRRLDS
TRPGMTVDDA LRECAALALA TVTVGTFGTL WSVHSLVSRA VRFRDRFGSG DREQLRARSV
EALGEILERG RDGIVDYLPH VRAVAGGATD VAQQSLLNEA GRVQVGLGDE RAALAMFERL
YQACRESLGE DDFATQAGLV GLGVAYGLLG QHELALDFKT RAYEVLARVE GADEEATLTA
LNNVAVTFGE LGDYAKARVL HRQIYATHLK RRGPSHPATL ASLNAYATAR ELDGHESLAL
RLRTRVVAAS RRYLRPDDPQ LADAISSLAV SHYRAGNSAA ARALFQEAYD VRRAIYGPSH
PDALSALEFA AVCADPEART AELRAVYRKR VTHADPGSPA ARRTLRNLII NLRSVHVSTA
NPPSDSVNRV FSEPVQEPPG DWTEVAVRLD DETTDERVED FELASYLHGA LVAEFGTDHP
ETLFAETCLG HATVCLGQLD SQIDDGLNVL RDAAEGMRVV LGCPEADLAV VDRLIDWAER
LAFDD
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