| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4488 |
|---|
| Symbol | |
|---|
| ID | 3519211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4730202 |
|---|
| End bp | 4732709 |
|---|
| Gene Length | 2508 bp |
|---|
| Protein Length | 835 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637286928 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_271136 |
|---|
| Protein GI | 71279282 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTCT CTGCGACTCA AAAGAGCACT AATGCTCAAG TAAAATCACC TTTGAAAAAA
ATAGTTAGTG CTACGGTACT GTCGACACTG GGTACAATGT TATGTTTTGT TCCTAACACC
TTCGCTCAGC AGTTATCTGG TGTTGTACTG AACAAACAAG GTCAACCGAT TAATAATGCT
ACTGTAGGGT TAAATGGAGA TTCACAGCAA GTACGCACAA ACTCTCTGGG ACTATTTAAT
TTTACCGATG TTAAGAAGGG GATTTTTGAA CTTCACATTA GTGCTAAAAA CTACGGTCAT
AGCAATCAAC ACATTACAAT GAAAGAAGAA GATATTACTG ACTTAAGTGT AGTGTTACCT
AGATCGGTAA TGGAAGTTAT TGATGTACAT GCAACACCAC TACATACTTC GTCAATCGAG
TCAGCATTGC CTATTAATGT GCTCAGTGAA GATGAATTAA AAATGAAACA AGCGGCAACG
TTAGGCGAAA CCTTAAAAAA TGAAGTTGGT GTTCATTCTA GTTATTATGG TCCGGTTGCC
AGCACACCGA TTATTAGAGG CTTGGATGGC CCTAGAGTTC TTATTACACA AAACGGATTA
GACGTTGGCG ATGCATCACG CGTCGGGCCT GATCATGTTG TCGCTACAGA AACGAGTACC
GCCACTCAAA TAGAAGTTTT ACGGGGTCCA GCGACACTTT TTTATGGCAG TGGCGCTATT
GGTGGTGTGG TTAACGTGGT GGATGGACGT GTGCCAACGA GTAGTGATGA TCAAGTCGAC
TACTTGTTAC AATATAACGA TGTATCTAAT GAGCAGCAGG CCTCTGTTAA TATCCAAACG
GGTACTGATA ACATTGCTTT TCATCTTGAT GCCTTTTGGC GTGACTCTAA AGACTATAAA
CTTGCGGGTG AAGCTGATAT CCATAACGAA GACCATGATG AAGGTCATGA AGATGAGCAC
GAAGAAGAAC ATGAAGAGCA TGGGGAAACT CGTCTAGCCA ATAGCTCAAG TACTTCCAGT
GGCGCAACAC TGGGTTCAAG TTACTTATTT GAAGATGGCT TCATCGGTTT CTCTTATGGT
TTTATGGACA GAGAATACGG CATTCCTGGA CATAGTCATG GGGAAGAACA TGATGATGAG
CATGAAGAAG AACACTCAGA TCATGATGAA GAAGTCGGTG TTTATGCCAA AATGAAGCAA
GATAGATGGC AAGTACTTGG TGAGTATAAT TTCGAGCAAC AATTTATTAG TAAAATAGCA
ACAAAATTTG CTTATAGTGA TTATCAGCAT CAAGAGATTG AGTCAGGTGA AGTGGGCACA
ACTTTTACCA ATAAAAGTAC CGAAGCACGC ATTGACTTAT TCCACGAAAA CACCGCAGGA
TGGCAGGGTG CATGGACAAT TCATTATAAA TCATCAGACT TTAAAGCACT GGGTGAAGAG
GCTTTTTCTC CTCCATCTAA ATCGGAAATG TTTGCTGTTG CTTGGTTAGA AGAGAAACAC
TTCGGTTCGG TATTGTTACA ATTAGGTGCA AGGGTCGAGC AGGTAAATAT AGATGCTGAT
GATAGCTTAA TTGGCTTTGA AGATTCTCAT CAGGATCAAC ATACAGAGCC ATCACACGAT
GAACATCATC AAACATTAGT CTCATTCGAT CAGCAGTCAT TTACGCCAAT CAGTGCCTCA
GTAGGCTTAG TATGGAATTA CCAACCAGGT TATAATTTAG GGTTCTCAAC AGCATTATCA
CAACGAGCGG CCTCTGCGGG AGAGTTATTT TCCTTTGGTC CACATATAGG AACTAATACC
TTTGAAGTCG GTGCTATGTT TGATGTGCAC CAAGAAGGTG ATGAAGTACA TGTTGAGTTA
GCAGAGCAAG CACCGAGTGT TGAAACGTCA CTTAATTTTG ACTTAACATT CCGAAAATTT
AATGGTGATT TTGGCTACGT CATTAGTGCT TTTTATAACC GTGTAGATGA TTATTATTAT
CAGCGAGATA CCGGTTTATT TTTTGTTGAG GAACACGGCC ATGCCGATGA ACATGAAGAT
GAAGCAGGGC TACCGATTTT AGTGTATCAG CAAGATGATG TTGAGATGTA CGGTGCTGAA
GCTGAGTTTG TTTATCAGGT TTCATCGTCA TTTAAAACAA GCCTAATAGC TGATTACATT
CGTGCACGCT TAGTGAATGA AGATGGAAAT GATAACTTGC CACGCATCCC GCCGATGCGA
GTGGGTGCTA TTTTCAATTA CCAAGCCGAT AAGTTTGATA GTGAGCTAAG CGTGAGCCAT
TACTTCGAGC AAGATGATGT TGCAGAGTTA GAGACAAACA CCGATAGTTA TACCATGGTT
GATGCAAACT TTAATTATTA CATCAATGGT GTTGGTGATG ATTTAACCGT GTATGTAAAA
GCACAAAACT TAACAGATGA GCACGCTCGT GTTCATTCTT CATTTCTAAA AGAAGTAGCA
CCATTACCAG GTCGTAATTT CAGCGTTGGC ATTCGAGGAA GCTTCTAA
|
|---|
| Protein sequence | MSFSATQKST NAQVKSPLKK IVSATVLSTL GTMLCFVPNT FAQQLSGVVL NKQGQPINNA
TVGLNGDSQQ VRTNSLGLFN FTDVKKGIFE LHISAKNYGH SNQHITMKEE DITDLSVVLP
RSVMEVIDVH ATPLHTSSIE SALPINVLSE DELKMKQAAT LGETLKNEVG VHSSYYGPVA
STPIIRGLDG PRVLITQNGL DVGDASRVGP DHVVATETST ATQIEVLRGP ATLFYGSGAI
GGVVNVVDGR VPTSSDDQVD YLLQYNDVSN EQQASVNIQT GTDNIAFHLD AFWRDSKDYK
LAGEADIHNE DHDEGHEDEH EEEHEEHGET RLANSSSTSS GATLGSSYLF EDGFIGFSYG
FMDREYGIPG HSHGEEHDDE HEEEHSDHDE EVGVYAKMKQ DRWQVLGEYN FEQQFISKIA
TKFAYSDYQH QEIESGEVGT TFTNKSTEAR IDLFHENTAG WQGAWTIHYK SSDFKALGEE
AFSPPSKSEM FAVAWLEEKH FGSVLLQLGA RVEQVNIDAD DSLIGFEDSH QDQHTEPSHD
EHHQTLVSFD QQSFTPISAS VGLVWNYQPG YNLGFSTALS QRAASAGELF SFGPHIGTNT
FEVGAMFDVH QEGDEVHVEL AEQAPSVETS LNFDLTFRKF NGDFGYVISA FYNRVDDYYY
QRDTGLFFVE EHGHADEHED EAGLPILVYQ QDDVEMYGAE AEFVYQVSSS FKTSLIADYI
RARLVNEDGN DNLPRIPPMR VGAIFNYQAD KFDSELSVSH YFEQDDVAEL ETNTDSYTMV
DANFNYYING VGDDLTVYVK AQNLTDEHAR VHSSFLKEVA PLPGRNFSVG IRGSF
|
|---|
| |