Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4415 |
Symbol | |
ID | 3523341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4652069 |
End bp | 4653307 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637286856 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_271064 |
Protein GI | 71277837 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATTG CATTAACTAA AAAACAACCT TGGAAAAAAT GGGTCGCTAT CGCCAGCTTT ACCCTAGTGC TAAGTTACGC CGGTTATAGC GTCAGTGGGA AGGCAACAAA ATCTGTCCAA TTAAAAGATT TAAGCTTTCA AACAGTAGTT CAAGGTGATT TAGATATTTA TGCTAATGCC TATGGTGAAT TTGCTTCAGC AAAAGAACGT TTATTAACGG CGCCTGCATT AGGTAAGGTC TCTGAAATTT TAGTTCGTCC TGGCACTAAA GTAACACCTG ACACTATAAT TTTGCATTTA TCAAACCCTA AATTAGTACA AGAAGTAAAT GCTGCTAATG GCCAACTTGC TCAACAGTTA GCCCAAAGAG AAGCATTCAA ATATGAACAA CAAAGTGAAC GTTTAAACTA TCAAGGTCGC ATTGCTGACA TAGAAGCCGA GATTGAAAAA GCTGAGCTTG AGCTCTCGGT GAACATGAAT CTGATGGACT TAGGTGTTTC TTCCAAAATA GAATTACAAC GCGCTAAATT GGCCGTGAAA CAGGAAAATA AAAGGCTTGG TTTCGAAAAG AAGAAATATA AGCAATTTAT TGAAATGCAA AGCCACCAAC TCACACAGCG TGATATCACT ATAAAGCAGC AGCATGCACA AGTTAACTTA CTTGAACAAC AGCTTGATGA TATGAAGGTG AAAGCAGGTA TTAATGGTTC ACTACAAACC TTAGAAGTTG AACTAGGTCA GAGCGTTCAA TTAGGTCAAT CACTAGCTAA AGTAGGTAGT GATGAAGTAT TGATTGCTCG TTTACGCTTA CCACAAAACC AAGCAGACCA AATAGATATC AATGCTCTAG TCTTAATCGA TACCCAAAAG GGCATTATCA AAGGTCACAT CACCCGCATC GAAAGTGTTG TTAACAATGG GTCAGTGCTT GCTGAGGCTG TCATTGATGA AGACTTAACT TCTAATGCAC GTCCTGCGTT ATCAATATCA GCACAAGTAT TTGTCAGGCA TCAACAAGAA ATCAGCTACA TAGAACAAGT ACCAGGGTTT CGCCCACGCA GTAAACAAAG CCTTTTTGTT CGCGACACTA ACGACTCATT AGTGCAGAGA GATGTCACCT TTGGCGAGTT ATCAAAAAAT AAATTAGTGA TCACTTCAGG ATTGAAACCT GGTGAGCAAT TAGTGAGTAG CGATACGCAA AAATACACTA AATATCCGCA ACTTTTAATT ATTGAATAA
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Protein sequence | MKIALTKKQP WKKWVAIASF TLVLSYAGYS VSGKATKSVQ LKDLSFQTVV QGDLDIYANA YGEFASAKER LLTAPALGKV SEILVRPGTK VTPDTIILHL SNPKLVQEVN AANGQLAQQL AQREAFKYEQ QSERLNYQGR IADIEAEIEK AELELSVNMN LMDLGVSSKI ELQRAKLAVK QENKRLGFEK KKYKQFIEMQ SHQLTQRDIT IKQQHAQVNL LEQQLDDMKV KAGINGSLQT LEVELGQSVQ LGQSLAKVGS DEVLIARLRL PQNQADQIDI NALVLIDTQK GIIKGHITRI ESVVNNGSVL AEAVIDEDLT SNARPALSIS AQVFVRHQQE ISYIEQVPGF RPRSKQSLFV RDTNDSLVQR DVTFGELSKN KLVITSGLKP GEQLVSSDTQ KYTKYPQLLI IE
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