| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3649 |
|---|
| Symbol | truC |
|---|
| ID | 3523321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3794104 |
|---|
| End bp | 3795018 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637286097 |
|---|
| Product | tRNA pseudouridine synthase C |
|---|
| Protein accession | YP_270317 |
|---|
| Protein GI | 71278963 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATT CTACTTTAGA AGTAGCAATT TCCGAGGATA TAGAGCCGGA AAAACCTGTA
CTTGATATCC TATATCAAGA TGAGTATATG GTAGCGGTTG ATAAACCTGC GGGGTTATTT
GTACATCGAA GTTATATGGA TAAAGATGAA ATTTATTTTG CTTTGCAGTT AGTTCGAGAT
CAGGTAGGGC AATATGTTTA TCCCGTTCAT CGATTAGACA GACCAACTTC GGGTGTACTT
CTTTTTGCTT TAACTAAAGA CGTAGCGACT AAACTAAGTG AAGCTTTTGC CAATAAAAGT
AGCCAAGCTG AGTTTAAGTC TGACACTGAG CTTGAGGGCA AGGTTCATGA TAAGACTCAG
ACGGGTCAAC AAGGCCAGCA GAGTATGACC GAAGGACTTA CTACGGATAA AAATATCGAT
GGCAGTGATT TAGCTATGGT GAAAACCTAT TATGCCTTAG CACGTGGTCA CTTGGCAGTA
CCGGTAGATT TAATCGATCA TCCACTGAAA GAGAAGCTAG ATAAATTGGG GGATAAAAAT
GTTAGCCGTG ACAAGCCAGC ACAATCGGCG CAGAGTTATT ATCAAGTAAA GCAGCAAGCG
AGTTTGCCGA TAAAAGTCGG TAAGTTTGAT AGTGTGAGGT ATTCTTTAAT TGAAGTACGC
CCTATTACTG GCAGACGTCA TCAAATTCGT CGTCACTTAG CGCATTTACG TCACCCTATT
CTAGGGGATA TCAACTACGG CGATAACAAG CAAAACCCAT TTTTCATCGA ACACTTTGGT
TTTAAACGCT TGATGTTAAT AGCCAAGTCA TTAGAATTTA ACCACCCCAT CAACAATGAT
AGAATTAAAA TATCAGCGCC GTTTGATGAA CAATGGCAGC AGGTTTTTAC TACATTTGAA
TGGCCACTAA GTTAG
|
|---|
| Protein sequence | MNNSTLEVAI SEDIEPEKPV LDILYQDEYM VAVDKPAGLF VHRSYMDKDE IYFALQLVRD
QVGQYVYPVH RLDRPTSGVL LFALTKDVAT KLSEAFANKS SQAEFKSDTE LEGKVHDKTQ
TGQQGQQSMT EGLTTDKNID GSDLAMVKTY YALARGHLAV PVDLIDHPLK EKLDKLGDKN
VSRDKPAQSA QSYYQVKQQA SLPIKVGKFD SVRYSLIEVR PITGRRHQIR RHLAHLRHPI
LGDINYGDNK QNPFFIEHFG FKRLMLIAKS LEFNHPINND RIKISAPFDE QWQQVFTTFE
WPLS
|
|---|
| |