Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2987 |
Symbol | |
ID | 3521690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3128654 |
End bp | 3130990 |
Gene Length | 2337 bp |
Protein Length | 778 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637285440 |
Product | TPR domain-containing protein |
Protein accession | YP_269687 |
Protein GI | 71281219 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.353968 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAAATA ATTTCCTGGA GCATTATTTC CACATGATAA AATCACCAAC AAACGCCTAT TTTGGACTGC TTTTTTTAGT ACTTAATACT TTTATAGGTC AAAGTTTTGC TCAAACTTTT GTTGGTTCAA AAGCCTGTAT TGGTTGTCAT GAAAAAGCCT ATCAAGACTG GCAAGGGTCA CATCATGATA TGTCAATGAA ACATGCCGAT AGCAAAAGTG TTTTAGGTGA CTTTAATAAC GCCACATTGG CTACCCAAGA TAAAAAGTCT GACAAGCTGA ATACCTTTTT TAAAAAAGGC CCTCAGTTCT GGGTCAATAT CAAAGGTGAA GATGGTAAGT TTCATGACTA TCAAATTAAA TATACTTTTG GTTATGAGCC ACTACAACAA TATATGGTTG AGTTCGATGA TGGCCGAGTT CAGCTGATAC CTTTCGCTTG GGACTCTCGA GTCAAAGAAG AAGGGGGACA ACGATGGTTC AACCTTTACC CCGATATGAC TGAAAAACAT CAAGAATTCT TTTGGACCAA TACTGGTCAA AACTGGAACT ACATGTGTGC TGACTGCCAT TCAACCAATG TAGATAAGAA CTTTGATATC AAAACAGATT CCTACAATAC TACTTTTAGT GAAATTAATG TCGCTTGTGA GAGCTGCCAT GGGGCCGCCA GTGAACATTT AACTTGGGCT AAGCAATCTA AAGATAAATC TGAAAACACA ATAAATAACA TGCCATTAGA TGGCAAAGGC TTTAGCCGTG TTTTATCAAA ATCAGTACAA AACTGGCAAG CAAAAGGCAA TAAAAAAACC TTAACACCAA AAAGTATTGA ACATAGCCAA CAAGTATTAG TGTGCGCGCA ATGCCATAGC AGACGAACTC AAGTAAGTAC TAACGACCAT GTAAAAAGTA ATGCCTTTGG TGAGCGTTAT TTACTTGATT TAGTTTCAAG CACCAATTAT CACCCTGACG GACAAGTCTA CAACGAAGAT TTTGTTTATG GTTCTTTTTT ACAGTCAAAA ATGTACAAAA ATGGCGTGGT ATGTAGCGAC TGTCATAACC CGCACACTGC ACAATTAAAA CTTCCAATCG AAACACTTTG CTTGCAGTGT CATCAAAGTG ATAACTACGC ATCAACACAG CATCATAAAC ATCCTGAAAG CTCTACTGGC GCACAATGTG TTAATTGTCA TATGCCTGAG ACGACATATA TGGAAATTGA TGCCAGACGT GATCATGGCT TTCATATACC AACGCCTAAT TTAGCCCAGA AATTAGGCAC ACCTGATACC TGTTTAAGTT GTCATGAGAA TAAAGATAGC CAATGGAGTG CTAGCAAGGT TAATGCTTGG TATCCTAAAT CAACGGTTGA AACTGAAAAA GACTTTGTCG CGGTTTTCTC TGCTATTAAC TTAGCGTTAA ATGAGCAACA ACTTCAAGGC GTTTCCTCAG AGTTATCTCG CATTGCTCAG ACTATCAGTT ATGCTGGCAT TATCCGCGCC TCTGCATTAA CTAAAATGGC TAGCGTATCT AATACCAATA CTATTATCGC TATTGCTAGA GCCGTTAAAA ACCCTGATGA AAATATACGA TTAGGTGCAA TCGAAGGGGC TCAAAATATG GCTGCTGCTG AAAAGTGGCG CATATTATCA CCTTTATTAA ACGACAAAGT GTTATCGGTA AGAATCAATG CTGCTTTTAC CTTAACCAGT TTGTGGCAAA ACTTATCCGT ACCACAAAAA GAACAATTAA CACCCGCCCT GAATGAATAT ATCGAAAGTC AGCATTTTAA TAATGATCGT AGTTTTTCTC ATTCTAATCG AGGAATTATT GCCGCCTATC AAGGACAATA CGATCAAGCC ATTAAAGCTT TCAAACAAGG CATCGCAATA GAGAAACATT TTGCACGAAC TTACCTTAAT TTGAGCCAAG TTTATTATCA ACGAGGCGAA AACCAAAAAA GTATTGAAAT ATTGCAGCAA GGAAAATCCG CAAACCCTGA TGATGCCAGC CTGCCCTATA ATTTAGGACT CGCGTATATT AGGGTTCAAG ATAAAGTAAA AGCAGCACAA GCATTAGCCA TTGCTACACA ACTTGCCCCC CAAAATAGTC ATTATTTTTA TGTTTATGGC TTAAGTTTAG AGCAGCAGAA ACCTAGTGCC GCTTATGGCG CTTTGTATCA AGCATTTCAA CTGAGTAATA ACCCGCAACA TTTATATGCG CTATGTGACA TGCAAGTCCG CCATAAAAGC GGTTTAGCAA AACAATGTTT AGCACAACTT GCCCCGTTAG TGCCCAGTAA TGTGATGCAA ACGCTTAGGC AACAGTTAAA TCAATAA
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Protein sequence | MLNNFLEHYF HMIKSPTNAY FGLLFLVLNT FIGQSFAQTF VGSKACIGCH EKAYQDWQGS HHDMSMKHAD SKSVLGDFNN ATLATQDKKS DKLNTFFKKG PQFWVNIKGE DGKFHDYQIK YTFGYEPLQQ YMVEFDDGRV QLIPFAWDSR VKEEGGQRWF NLYPDMTEKH QEFFWTNTGQ NWNYMCADCH STNVDKNFDI KTDSYNTTFS EINVACESCH GAASEHLTWA KQSKDKSENT INNMPLDGKG FSRVLSKSVQ NWQAKGNKKT LTPKSIEHSQ QVLVCAQCHS RRTQVSTNDH VKSNAFGERY LLDLVSSTNY HPDGQVYNED FVYGSFLQSK MYKNGVVCSD CHNPHTAQLK LPIETLCLQC HQSDNYASTQ HHKHPESSTG AQCVNCHMPE TTYMEIDARR DHGFHIPTPN LAQKLGTPDT CLSCHENKDS QWSASKVNAW YPKSTVETEK DFVAVFSAIN LALNEQQLQG VSSELSRIAQ TISYAGIIRA SALTKMASVS NTNTIIAIAR AVKNPDENIR LGAIEGAQNM AAAEKWRILS PLLNDKVLSV RINAAFTLTS LWQNLSVPQK EQLTPALNEY IESQHFNNDR SFSHSNRGII AAYQGQYDQA IKAFKQGIAI EKHFARTYLN LSQVYYQRGE NQKSIEILQQ GKSANPDDAS LPYNLGLAYI RVQDKVKAAQ ALAIATQLAP QNSHYFYVYG LSLEQQKPSA AYGALYQAFQ LSNNPQHLYA LCDMQVRHKS GLAKQCLAQL APLVPSNVMQ TLRQQLNQ
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