| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2650 |
|---|
| Symbol | |
|---|
| ID | 3519599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2754470 |
|---|
| End bp | 2757010 |
|---|
| Gene Length | 2541 bp |
|---|
| Protein Length | 846 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637285104 |
|---|
| Product | alpha-1,2-mannosidase family protein |
|---|
| Protein accession | YP_269364 |
|---|
| Protein GI | 71277921 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0929725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACACTT TTAAAGTTAC AGCGACGTGT TTACTAACAC TTGGCTTATC AATCTCAGGC
TGTAATAGCC AAAACAACAA TGCTGACAAT GAAAATAAAA CCAGCTCAGC GCCAGAAGAG
TGGGTTAGTA ACCCTGTTGA TTACGTTAAT CCTTTTATTG GCACTGAAGG GGTATATAAC
CACCGTCAAG CCGCTAATGT TGTGCCTGGC GCTGTGGTGC CTCATGGTAT GTTTAACTTT
GGCCCTGAGC ATGCTTATAC CAAAGATTTA CTCAAAGAAA GCGAGCGCAT GACCAAGCAA
GTGCTCGGCG AAAAAGGTCG AATTCCTGTG GGGCCAGGAG GTTACAATTA TGGCGCAAGT
CGAATTAAAG GATTCTCATT TACGCGCTTA TCGGGTACCG GCTGTTTAGG TGCCTCGGGT
GATATTCCTG TATTACCTTT TACTTCTGCT ATCAAACATT CGCCAGATAC CGATATGCTA
GATGCTTATT ACAGTGCAGG CTTTACTCAC CAAAACGAAA CAGCAACACC AGGTTATTAT
CAGGTAAAAA TGGATAATGG CGTTGATGTT GAATTAAGCG CAACAACCCG AACGGGCATT
GCACGTTTTA CCTTTGATAA TCCAGAACAG GCAAAATTAC TGTTTAGAAG CTCATATTCT
CAATTAGGCA GCGGTGATGC CTATACCAAA ATTGATCAAG AAAAAGGCGA AATAACAGGT
CACGTTACTA GCGGTAATTT TTGTGGTTAT TTAGGCGAAT TCAACCGTCG CGATTATTAC
ACTTTACATT TTGTCGCCAA ATTAGACGTG CCAATTTCAG GCACCGGTGG TTGGCAAGAC
GACACAGTTA CTAAAAATAG TGACAGTGCT AAAGGTGGCA TGGGATATGG TGAAAAAGGT
ATTCCTAAAT TAGGTAAAGG CTCTGGTGCT TGGGTTGATT TAGATCTCTC ACAGCAAAAA
ACAGTAACCA TGACAGTCGG TATTTCTTAT GTCAGCTTAG CCAACGCACG TGAAAATTTA
GCTAAAGAGC AAACAGAAAC CTTAGTTAAC AGCTCACAAA CTAAAGAAAA ATATTTTGAA
GAAGTAAGAA AAGAAGCTTA CCAAACGTGG AATAAAACTT TGGAGAAAGT TAAAGTTGTT
TCTACTAATA AAGATAAGTT AACCACGTTT TATACCGCGC TATTTCATTC ACAATTCCAC
CCTAATGTAT TTAGTGATGT TAACGGCGAA TATTTAGGTT TTGATCAAAA AGTTCATAAA
ATTAATAATA AACAAAAGGC GCAATACGCA AATTTTTCTG GTTGGGATGT TTATCGATCG
CAATTGCAAC TGGTAACGTT GCTTGATGCT ACCCGTGGTA GTGATATTGC TCAATCGTTA
TATAACCAAG CTCAACAATA TAATGGTGTT TGGGACCGTT GGACCCATAA CTCTGGTGCT
ACAGGTGTAA TGAGTGGTGA TCCATCTACC ATTGCTATCG CTAACTTTGC TGCCTTTGGT
GCAACCGGTT TTGATATCAA AGGCGCATAC CAGTCTTTAC TCAAAGCGGC TAATGAACCA
ACATCATTTG ATTTAAGTGA TGAAGGTTGT CCTGTATTTT GTCGAGGACA ACATCCATCA
CTCGATCAAT GGCAATCCAT TAATTATATT TCGGATCAAT CAAATAGCTG GGAAGGTGCA
TCAGAAACAC TTGAACAAGC GTCTGCTGAC TTTGCCTTAT CGCAATTAGC CAGCAAGCTA
GGCGATAACG CATCATCACA AGCACTATTA ACACGCTCAG GCTACTGGAA AAACCTGTTC
AACCCACAGG CAACTAAAGA AGCAGGTTAT ATTCAAGGAC GTAATAAAGA CGGTACTTGG
AAAGCTGATT TTGATGCAAA CAGTGAACAT CTATTTGTTG AAGGTAGCCC TGCACAGTAT
TTATGGATGA TACCTTTTGA TGGTAATGGC CTGAAAGAGA TGGTCGGCGG TGATAAAGTG
ATGGCAAACC GCCTTGATAA CCATTTTCAT AAACCTGATG GTAGCTGGGT TTTATTTAGA
GATAGCGCCA CCTATTCTGA CGTGTCTAAC CAGCCATCAA TTGCATCACC TTGGATGTAC
TTATTCACCG GACAAGCATA TAAAACTCAA GACACTGTGC GGGCAACCAT TGACTTATTA
TGGAATAACA CCACTAAAGG CATCCCTGGC CAAGATGATT TAGGTCAAAT GTCTTCTTGG
TATGTTTTTT CAGCGTTAGG CATATACCCA TTATTACCAG GTCGTGCTGA CATGGTGCTA
GCAAGTCCTA TTTTCTCAAA AACAAAAATA GGAAATTTAA CAATTAATGC GCCAAATACG
TCAAGTGAAA ACCGTTATAT TACAAGTTTA AAAGTAAATA ATATTGATAG CAGCAAGAGC
TGGATTGACG ATAGCTATAT TTCAGCTCCC GTTAAACTAG ACTTTGAGCT TTCATCTGTG
CCAAACACCC AATGGGGGGC TAAGACTGCT GATAGACCTC TATCATTTTC AACGGATAAT
TCGGCAGTAG GAGATAAATA A
|
|---|
| Protein sequence | MHTFKVTATC LLTLGLSISG CNSQNNNADN ENKTSSAPEE WVSNPVDYVN PFIGTEGVYN
HRQAANVVPG AVVPHGMFNF GPEHAYTKDL LKESERMTKQ VLGEKGRIPV GPGGYNYGAS
RIKGFSFTRL SGTGCLGASG DIPVLPFTSA IKHSPDTDML DAYYSAGFTH QNETATPGYY
QVKMDNGVDV ELSATTRTGI ARFTFDNPEQ AKLLFRSSYS QLGSGDAYTK IDQEKGEITG
HVTSGNFCGY LGEFNRRDYY TLHFVAKLDV PISGTGGWQD DTVTKNSDSA KGGMGYGEKG
IPKLGKGSGA WVDLDLSQQK TVTMTVGISY VSLANARENL AKEQTETLVN SSQTKEKYFE
EVRKEAYQTW NKTLEKVKVV STNKDKLTTF YTALFHSQFH PNVFSDVNGE YLGFDQKVHK
INNKQKAQYA NFSGWDVYRS QLQLVTLLDA TRGSDIAQSL YNQAQQYNGV WDRWTHNSGA
TGVMSGDPST IAIANFAAFG ATGFDIKGAY QSLLKAANEP TSFDLSDEGC PVFCRGQHPS
LDQWQSINYI SDQSNSWEGA SETLEQASAD FALSQLASKL GDNASSQALL TRSGYWKNLF
NPQATKEAGY IQGRNKDGTW KADFDANSEH LFVEGSPAQY LWMIPFDGNG LKEMVGGDKV
MANRLDNHFH KPDGSWVLFR DSATYSDVSN QPSIASPWMY LFTGQAYKTQ DTVRATIDLL
WNNTTKGIPG QDDLGQMSSW YVFSALGIYP LLPGRADMVL ASPIFSKTKI GNLTINAPNT
SSENRYITSL KVNNIDSSKS WIDDSYISAP VKLDFELSSV PNTQWGAKTA DRPLSFSTDN
SAVGDK
|
|---|
| |