| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0993 |
|---|
| Symbol | |
|---|
| ID | 3519824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1008217 |
|---|
| End bp | 1011057 |
|---|
| Gene Length | 2841 bp |
|---|
| Protein Length | 946 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283458 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_267742 |
|---|
| Protein GI | 71279369 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor
[TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.609458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAGGG GAGAATATTC AATGCTACAT TTTAAACCAA GCAAAATGAC ATTAGCTTTG
CTTTCAAGTG GCTTAATGGC ATTAAGCACT GCAAGTTATG CTGCCGAAGA AACGAAAGCT
GCAGAAGAAG AAGTTGAAGT AATTCAAGTA ACAGGTATTC GTGGTAGCTT ACAAAGAGCA
CAAGCGATTA AAATGAGCTC AAACTCAATT GTTGAAGTTC TCTCTGCTGA AGATATCGGT
AAATTACCTG ATACCAGTGT TGCAGAATCA TTAGCCCGTC TTCCTGGTGT AACCGGCGAG
CGTCGTAACG GTCGTACTAG TGGTCTATCA GTACGTGGTT TCAATGAAAA CTATATTGGT
ACTTCGTTAA ACGGTCGTGA ATTACTTGGT ATGGGTGATA ACCGTGGCGT AGAGTTCGAT
TTATACCCAA CTGAAATAGT ATCTAACATT GTAGTATACA AAACACCTGA AGCTGGCCTT
ATAGCGCAAG GCATTGGTGG TACTATTGAT CTACAAACCG TAAGTCCATT AAATTCAGAT
GCTTCGATGA CACTTAATGC TGTTTACGAA CAAAATGAAA AAGATTCAGC CAACCCAGAT
TATGATAACA ACGGTCATCG TTTATCATTC AACTATGTCG ACCAATTTAT GGACGATACC
TTAGGCCTAG CTTTTGTTGT TTCTAATCAA GAAACACCTC GTCAAGAAGA GAACTTCCGT
GGTTGGGGTT ATGCTGATGT TGGCTATGCA AGTTGTGATG ATAATGGCGA AAACTGTGTA
AAAAAACAAG ATTTAAGCGG TAATGATATA GATCCTGCTA CAAAAGTTTT AGGTGGCCAT
GATTCATTTG CCCGCTCTGC TTTGATGGAA CGTAGTTCAG TTGCGGCAAT TATTGAATAT
CAACCTAATG ACCAACTTAG CGTTAAATTC GATGCCTTAT ACATAGACTT TAATGAAAGT
GATGTACGTC GTGGCCTTGA AGAAGGTGGC CCTGTATGGG GTGGTGTCAA CTACGATGTT
GCATCAATCG AAAATGGTTT AGTTACTGCA GGTCAATGGG ACGGTTTCCA TTCAGTAGTT
CGTAATGACG CCAGAACACA AGAGTCTGAA CTGACTACCT TTGGCTTAAA TGTTGAATAT
GCCTTAGATG ATAATTGGTC GACCGTTTTA GATATATCAA CAGGTGATGT TGATAAATCA
ATCATCGATT TAGAAAGCTA TTCAGGTACT GGTCGTGCTG GCGTAGATGG ACGTCCATCA
GCTGCTCGTT CATGGGAAAT GACTTCAACT GGCGTTATGT ATAGCGCTCA TCCAACGCTT
CCAGGTGTTG ATTATACTGA TGAAAGCCTT ATGCGTCTTG CAGGTCCTCA ATCATGGGGT
GCACCTGTTA TTGGCAGTGA TGCACAAGAT GGTTTTGTTA ACCGTCCTGT ATTCGAAGAA
GAATTAGACA GTATTCGCTT TGAAGTTAAC GGTGTAGTTG AATACAGTAT TATTAGTGGC
ATCAGCATGG GTGTTAACTA CTCTGAACGT AGTAAAAGTA AAATCAATGA AGGTGATTAC
CTAACTTCTC CTGAATACCC TGGTGCTGGA GCTATCCCTG ATGTTTTAGG TGTTGCAGGT
TTAGACTTCA TTGGTATTGA TGGTGTCCTT GCTTACGACA GTTTAGGTTT ATACAAAAGT
GGTTATTACA CCGCAACAGA AGCCTCTTTA GTGCAAACTG ATCGCTTAGG TGATACCTAT
ACCGTTGATG AAGAAACATT AACGTTATAC GCAAAAGTTG ATTTTGAAGC TGATTTTGCT
GGCATCTACA TGACAGGTAA CTTTGGCGTT CAATACATTG ACGTTGACCA ATCTTCAACA
GGTTTTTCAA CGGTTGAAAA TGCACAAGCT TATGTTGTAT CAACACCAGT AAGTGGCGGC
GCTTCATATT CGGATGTGTT ACCAACACTA AACTTGAATT TTGAAATTGC TGAAAATCAA
TTTATTCGTA CTGGTTTATC AAAAGTCCAA AGTCGTCCTC GTATGGATGA TATGCGTCCT
AATGCCCGTG CTACTTTTGC TTATAATGAT AATCAAATTC AAAGTTCAAA CCCACAAAAT
GGTCCTTGGA CTGGCAGTGC TGGTAACCCG ATGTTAGAGC CTTTAACAGC GAACCAGTTT
GATCTTTCTT ACGAAAACTA CTTTGCTGAA GATGGTTATT TTGCCGCAAC ATTTTTCTAT
AAAGATTTAA CTAACTGGCA TAGAACTTCA GATGCACTAA CTGATTTTTC TGATGTGTAT
ATCCCTGAGA TACATAAAGA TTCTAATGGT GATGCTCCTG CAACGTTGAA TGGTTTTGTT
AGTACCACCA CAGATGGTTT TGAAGGTTTC GTACGTGGTT ACGAATTACA AGCAAGTGTT
CCATTTCGTA TAATGCATGA CTCTTTAGAA GGTTTTGGTT TGGTCATTAG TGGAACATTC
CTAGATGGTA AACTTAGTGA TGGAGGTAAA GTGCCTGGAC TTTCTGAAGA AAGTTACTCA
TTAACCGCTT ACTATGAAAG AAACGGCTTC GAAGTTCGTA TCGCCGGTAC AAAACGTGAT
GAATTCTTAA CTGAAACACG CGGAGGCAGC CTTGCTTTGG AAGCAACTGA TGATTTAGGT
GCCGAAATTT GGGATGCACA AATCAGTTAT GACTTCGATG AATCTGGCAT TGAATCACTA
CAAGGGTTAC GTGTTTCATT CCAAGCTCAG AACATTACCG ACGAAAAGAC TATTCAAGCT
GAAGCGAATG ATGGAAGACA AATTACCTCT TATCAATCAT TTGGTGCTAA CTACTCGTTA
GGTCTTAACT ACTCCTTCTA G
|
|---|
| Protein sequence | MARGEYSMLH FKPSKMTLAL LSSGLMALST ASYAAEETKA AEEEVEVIQV TGIRGSLQRA
QAIKMSSNSI VEVLSAEDIG KLPDTSVAES LARLPGVTGE RRNGRTSGLS VRGFNENYIG
TSLNGRELLG MGDNRGVEFD LYPTEIVSNI VVYKTPEAGL IAQGIGGTID LQTVSPLNSD
ASMTLNAVYE QNEKDSANPD YDNNGHRLSF NYVDQFMDDT LGLAFVVSNQ ETPRQEENFR
GWGYADVGYA SCDDNGENCV KKQDLSGNDI DPATKVLGGH DSFARSALME RSSVAAIIEY
QPNDQLSVKF DALYIDFNES DVRRGLEEGG PVWGGVNYDV ASIENGLVTA GQWDGFHSVV
RNDARTQESE LTTFGLNVEY ALDDNWSTVL DISTGDVDKS IIDLESYSGT GRAGVDGRPS
AARSWEMTST GVMYSAHPTL PGVDYTDESL MRLAGPQSWG APVIGSDAQD GFVNRPVFEE
ELDSIRFEVN GVVEYSIISG ISMGVNYSER SKSKINEGDY LTSPEYPGAG AIPDVLGVAG
LDFIGIDGVL AYDSLGLYKS GYYTATEASL VQTDRLGDTY TVDEETLTLY AKVDFEADFA
GIYMTGNFGV QYIDVDQSST GFSTVENAQA YVVSTPVSGG ASYSDVLPTL NLNFEIAENQ
FIRTGLSKVQ SRPRMDDMRP NARATFAYND NQIQSSNPQN GPWTGSAGNP MLEPLTANQF
DLSYENYFAE DGYFAATFFY KDLTNWHRTS DALTDFSDVY IPEIHKDSNG DAPATLNGFV
STTTDGFEGF VRGYELQASV PFRIMHDSLE GFGLVISGTF LDGKLSDGGK VPGLSEESYS
LTAYYERNGF EVRIAGTKRD EFLTETRGGS LALEATDDLG AEIWDAQISY DFDESGIESL
QGLRVSFQAQ NITDEKTIQA EANDGRQITS YQSFGANYSL GLNYSF
|
|---|
| |