Gene CPR_2079 details

Gene Information

• Locus tag: CPR_2079
• ID: 4206034
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2305743
• End bp: 2306399
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 642566629
• Product: putative ABC transporter ATP-binding protein
• Protein accession: YP_699388
• Protein GI: 110803900
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATATAT TAGAAATTAA AAATTTATCA TATAGTTACA CAAACTCTAG AGAGGAGATT 
TTATCATCAG TAAATCAAAA ATTTGAACTT GGAAAGTTTT ATGCAATAAT AGGTAAATCA 
GGAACAGGAA AATCTACTCT ACTTTCTTTA TTAGCTGGGT TGGATAAACC TCAAACTGGA 
CAAGTTTTGT TTAAAAATGA AAATATAGAT AAAAAAGGAT ATAGTAATCA TAGGAAAAAT 
AATATATCTT TAGTATTTCA AAACTATAAT TTAATAGATT ATTTATCTCC AATTGAAAAT 
ATTAGATTGG TAAATAAAAA AGCATCAGAA AATATTCTAA TCGAATTAGG ACTTGATGAA 
AAACAGATAA AAAGAAATGT AATGAAATTA TCAGGAGGAC AACAACAAAG AGTTGCTATA 
GCAAGAGCTT TAGTATCGAA AGCACCTATA ATTTTAGCAG ACGAACCTAC AGGTAATCTT 
GATAGTGTTA CTGCTGGGGA AATAATAGAT ATATTAAAGA CGTTAGCTAA AGAGAGAAAT 
AAATGTGTGA TAGTTGTAAC ACACAGTAAA GAGGTTGCAG AGGCCGCAGA CATTATTTTA 
GAGTTGAGTG GTAAAAAACT AAAAAAAGTA AGTAAAATTA ACTCGGAGGT ACAGTAA 

 

Protein sequence

MDILEIKNLS YSYTNSREEI LSSVNQKFEL GKFYAIIGKS GTGKSTLLSL LAGLDKPQTG 
QVLFKNENID KKGYSNHRKN NISLVFQNYN LIDYLSPIEN IRLVNKKASE NILIELGLDE 
KQIKRNVMKL SGGQQQRVAI ARALVSKAPI ILADEPTGNL DSVTAGEIID ILKTLAKERN 
KCVIVVTHSK EVAEAADIIL ELSGKKLKKV SKINSEVQ