| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1053 |
|---|
| Symbol | |
|---|
| ID | 4205536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1199224 |
|---|
| End bp | 1200645 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 642565609 |
|---|
| Product | GerA spore germination protein |
|---|
| Protein accession | YP_698375 |
|---|
| Protein GI | 110803063 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.273737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGACTTAA CATCAAATTT TGATAAAAAT ATAAATACTT TATCTAAAGC TTTAAGGGTT
GGAAAAAGTT TTGATATAAT TGAACGTTCA ATAATAATTG GGGATAAAAA AGCCACAATG
TATTATATTG ATGGATTTGT AAAAGATGAC GTAATGGAAT TAATCATGAG TGACTTCTTT
TCCTTAAGCA AAACTGAAAT GAACTTAATA AAATCACCTA AGGATTTTAT GAGAAGACAA
ATCCCTTATG TAGAAGTAGC TGAAGAAGTA TCCATAGATA AAATAGTATC TCAAATTCTC
TGTGGACAGA CAGCATTAAT TTTAGAAGGA TTCTCCAGTG CAATAATGAT AGATTTAAGA
ACTTATCCAG TTAGAGGGCC TCAAGAACCA GAAACTGAAA AAGTATTAAG GGGTTCTAGG
GATGGCTTTG TAGAGACCAT TGTATTTAAT ACTGCATTAA TTAGAAGAAG AATAAGAGAT
CCTAGACTTA CCTTTGAAAT GATGTCTATA GGAAATGTAT CAAAAACAGA TGTGGTTATA
TCATTTTTAG ACGAGGTAGT TGATAAAAAA ACTCTTAATT TAATAAAAAA GAAATTTGAA
AATTTAGATA TACAAGCATT AACCATGAGC GAACAAAGCC TTGTTGAATC TCTTTCAAAT
GCCTCATGGT ATAATCCATT CCCTAAGGTT AGATATACAG AAAGGCCTGA TGTTGCAGCT
GCCCATATAA CAGAGGGAAA GATAGTTATT ATTATAGATA ACTCTCCTTC AGTTATAATT
TTACCAACTA CTATCTTTGA TTTTATACAG GATGTTGATG ATTATTATCT TCCTGTAATA
ACAGGCAATT TTATTCGTTT AATAAGAAAT TTCATACTAA TTTCTACTAT TTTTATAACC
CCACTTTATT TGCTTTTAAT CCAAAATGCC TATAGAATAC CTGATTACTT AAAATTTTTA
TTACCTGTTG ATGGCTATAA AGTCCCATTG ATAGTTCAAT TTTTACTTCT TGAAGTTGCA
GTGGATGGAT TAAAACTTGC CTCTTTAAAT ACGCCAAATG CCCTTGGCAT GTCCTTATCT
GTTATTGGAG GATTAATACT TGGCCAATTT GCTGTAGATA CTGGGTTGTT TTTACCACAA
ACCATATTAT ATATGGCTAT AGTTACACTA GGAAGCTTTT CTCAACCTAG TTTAGAACTT
AGCTATGCCT TAAAGTTTTG GAGAACTCTT TTGCTTATAT TAACAAGCCT ATTTAATGTA
ATAGGATTTT TTGTAGGATT AATAATAGGA ATAGTTTTAA TTGCAAGTAA TAAAACTTTA
ACTGGTGATT CCTACCTGTA TCCTCTTATT CCCCTTGACT GGAAAGCACT TAAAGCACTT
ATCTTTAGAG TAAGATTAGT ACCTAAACAA AAAGAAGAAT AA
|
|---|
| Protein sequence | MDLTSNFDKN INTLSKALRV GKSFDIIERS IIIGDKKATM YYIDGFVKDD VMELIMSDFF
SLSKTEMNLI KSPKDFMRRQ IPYVEVAEEV SIDKIVSQIL CGQTALILEG FSSAIMIDLR
TYPVRGPQEP ETEKVLRGSR DGFVETIVFN TALIRRRIRD PRLTFEMMSI GNVSKTDVVI
SFLDEVVDKK TLNLIKKKFE NLDIQALTMS EQSLVESLSN ASWYNPFPKV RYTERPDVAA
AHITEGKIVI IIDNSPSVII LPTTIFDFIQ DVDDYYLPVI TGNFIRLIRN FILISTIFIT
PLYLLLIQNA YRIPDYLKFL LPVDGYKVPL IVQFLLLEVA VDGLKLASLN TPNALGMSLS
VIGGLILGQF AVDTGLFLPQ TILYMAIVTL GSFSQPSLEL SYALKFWRTL LLILTSLFNV
IGFFVGLIIG IVLIASNKTL TGDSYLYPLI PLDWKALKAL IFRVRLVPKQ KEE
|
|---|
| |