Gene CPF_1207 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1207 
Symbol 
ID4203631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand+ 
Start bp1370553 
End bp1371194 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content23% 
IMG OID638082088 
Productpentapeptide repeat-containing protein 
Protein accessionYP_695653 
Protein GI110799366 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00122805 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTTT GGGAAATAGA GTTACCTAAA ATTCCTTTAG AATTAAATAA TGTAGATGAT 
GTAGCAGAAG AAATTTTGAA AGAAGAAAAA CTAGAGGAAG TTATAATAGA AAATGTAATT 
ATAGAAAATT TAGAAGAGAG TTCAATAAAG CTTGATTCAT GTATATTTAA AAATGTTATA 
TTTATAAACT GCAATTTTAA TAGAATAGAT ATGACAGATG TAAAATTTGA AAAGTGTGAT 
TTATCTAATT GCGAATTCTT TGATGGTGGG TTTTATAGAG TAGAGTTTAA AGGCTGTAAA 
ATCATAGGAA GTAGATTTGA TGAATCATCA TTAAACAATA TTTCTTTTAA AGATTGTTTA 
GGAAAATATA TTAATTTATC TTTTAGTAAT TTAAAAGAGG TGGAATTTAA AGATTGTGAT 
TTAACAGGAG CTGTTATTCA AGAAGCTAAC TTAAAAAAAG TGAATTTTCA AAATGTGAAT 
TTAAAAGAGT CTATATTTAG AGGAACAAAT ATTAAGGATA TTGATTTTAG AACTTGTAAT 
ATAGAAGACA TAGATTTAAA CATGGAAAAC TTAAAAGGTG GAATTTTTAC AGCTTATCAA 
GCTTTAGAAT TAAGTAAATT TTTAGATATA ATAATAAAAT AG
 
Protein sequence
MKVWEIELPK IPLELNNVDD VAEEILKEEK LEEVIIENVI IENLEESSIK LDSCIFKNVI 
FINCNFNRID MTDVKFEKCD LSNCEFFDGG FYRVEFKGCK IIGSRFDESS LNNISFKDCL 
GKYINLSFSN LKEVEFKDCD LTGAVIQEAN LKKVNFQNVN LKESIFRGTN IKDIDFRTCN 
IEDIDLNMEN LKGGIFTAYQ ALELSKFLDI IIK