Gene CNB01140 details

Gene Information

• Locus tag: CNB01140
• ID: 3255711
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006684
• Strand: +
• Start bp: 342617
• End bp: 349148
• Gene Length: 6532 bp
• Protein Length: 1927 aa
• GC content: 52%
• IMG OID: 638254765
• Product: nucleoporin nup189, putative
• Protein accession: XP_568788
• Protein GI: 58262756
• TIGRFAM ID: [TIGR01376] Chlamydial polymorphic outer membrane protein repeat

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.444999
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGGATA ACGCCGTTGT GATGTCTGCA GTTCAGTCCA GTTCAGGCGC GTCTTCGAGC 
CATTATTCGA GCGGCGTTAC GCAAACCACA GCTACTTTCT TCCTACTCTT CAATCCCTTC 
CTTCCTTACC TGCTCCCTGA TATCTCGCCC GCAGAGGAGG AAGCGGCAAC TAGGAAGTCT 
TGGTATTCAC AGCAACACTT AGCTACCATG TTCGGCAGCA CTTCGGCATG GGGTCAAAAT 
AACCAAAACC AACAACAGCA GCAAGGCGGA GGGCTCTTTG GCGGTGGAGG AGGAGGAACT 
TTCGGCCAGC AGAATACTGG GGGTGCGTAT GAGCGGGAGC CTCATGGTTG CTTGGTTGCC 
AAGAGCTGTG CTCAAGTCCT GATAGTGGAC GAAACATTGG CCGAGTGTTG TCCTTACAGC 
CGGTCAATGA TGGAGTTCTC CATCAGGACT CGAGGGGTTT TACAGCAGCT TACTGACATA 
GTATCGTAGG GTTCGGCCAA AGTGGCACCG CTACCGGATT CGGACAGCCT ACACAAAATA 
CCGGCGGCGT TTTTGGCGGC GGAGCTACGA CCAACACTGG ATTTGGTGAG CTTGGAAGTT 
TAAGCGATTT CAGTGGCTAG ACACTCATCA GTGAGCAGGT GGATTTGGAG CCAGTAACCA 
ACAACAGCAA CCACAACAAT CCAATGCGTT TGGAGCTGCG AGGCCGGCGT TTGGTGCCTC 
AGGATCAACC TTTGGTCAAA ACACCAGTGA GTCAACAATG CAAATGTGAT ACCTCAAATC 
CTGAACTTTT TTATAGCTGG AGGTGGTCTG TTTGGAAGCT CAAACACAGC CAACACTGGA 
TTCGGGTCCA ATACTTCCAA CACATCTGGC GGGGGTCTTT TTGGTGCTAA ACCTGCGACT 
TCTACGTTTG GATCGGGTGC AACTTCAAAC CTCTTTGGCG CTAAGCCTTC CACTGGCTTT 
GGTGCTTCCT CCAACACTCA GGAAGTCCTC AAGGGTCCTG CTGAACTCCA AACCTACCGA 
ACCGATGTCC CCCCTCCTCC ACCTCCCTCG ACCGGTACTG CCAATCCAAT TTATTACCCT 
ACTTGGCAAG CAGATCCTTC CACCAATACG GCTCTCGGTA AGGAGGGGCC GCCCCATCTT 
TTCCACTCTA TCACTGCTAT GCTTCCTTAT CGAGGCTGCA GTTGGGAAGA ATTGAGAGCG 
TTGGATTACC AGCAAGGAAG AAAGGAGGCC ACACCCCAGC AGCAGAATGC CTTTGGAGCC 
TCGTCCGCCG GAGGCTTCGG TCAGCCTGCA AGCACTGGAT TCGGTCAGCA ACCCGCTACT 
ACTGGATTTG GCGCCAAACC AGCTGGCGCT GGTCTCTTTG GGTCATCCTC CCCTGCTACT 
GGCTTTGGTT CGACGACGTC AAATACCAGC ACTGGGTTCG GCGCTTCCAA CACTAACACG 
GGTGGCGGGT TGTTCGGCCA ATCCCAGCCT CAACAAGGTT CTTCATTGTT TGGTCAGACC 
AATACCAACA CTGGTGGCGG GCTTTTCGGC CAGACGCAGC CTCAGCAAAG CACTGGTGGC 
GGTCTCTTTG GCAGCAGCAA CACCAGCACT ACCAACCCTT TCGGTGGTGC TCAAACCACA 
CAACAGCCTC AGGCCACAAG CACCTTTGGA GGGTTCGGCC AAAGTAAGCC TGCTTTCGGA 
AGTACAGGTA CTACAGGTTT TGGGACAGGC AGTACCGGAA CGAGCACATT TGGTCAAACA 
GGGACCGGCA CAACTGGTTT CGGCGGCTTC GGTCAAACGC AACCGCAACA ACAACAACAG 
CAACAGCAAC AACCTACGAC GGGCGGCGGA TTATTCGGTG GTGGCGGATT TGGCAAGTAG 
TCGTAAAGAT TTTCGCAGGA CAGTAACTGA CCTGATGACT TAGGTGCCAC TAATACTCAG 
CAGCAAGCTC CCGGTACAGG ACTTTTCGGC CAGACTGCTC AACAGCAACA GCCTGCTGCG 
ACTGGGTTTG GGGCCGCGAA GCCCGGTGGA TTGTTTGGAA GCACGACTAC CCCTGCTTCC 
ACGAATACAG GATTTGGCGG TACGTTGCTT ACCTTGATTT CACTGAATTA CGTCTCATTT 
ATCCTATTTC AGGTTTTGGG CAGACCAGCA ATACCAGTCA ACCCGCCGGC ACCGGTTTGT 
TTGGAAGCAC TAATACAAAC ACCAACACCA CTGGAGGTGG ATTATTCGGC CAAACCCAGC 
CCCAACAAAC GACCCAACAA CCAGCAACCG GTGGGGGTCT GTTTGGAAGC ACGAATGCTG 
CCCCTGCAAC TGGCGGTGGT TTGTTTGGTG CGAAGCCTGC TACGACTACA GCTCCTAGTA 
CAGGCCTTTT CGGCCAAACG CAACCAACTC AACAACCTGC CCAGACGGGA GGTGGATTAT 
TTGGCAACAC CGCTTCAACG ACTGGCGGCG GTCTCTTTGG CAGTACCACA AACAACTCCC 
TTGGTCAATT AGGCCAACAA AACCAACAGA GCGGTGGCGG ATTATTTGGC GCGAAGCCAG 
CCACAGGCGG TGGTCTGTTT GGTGGAGCGA GCGCGACCGG TACTGGTACT GGTCTCTTTG 
GTCAACAACC CCAGCAGCAG CAACAGCAAC AGCCGCAAAC TGGTACCACA GGTGGACTGT 
TCGGCAACCT CGGTCAATCA CAGCCCGCCT CAACGGGCTT GTTCGGCAGC ACGACGACTC 
AGCCGGCTCA GCAAAGCACC TTTGGCGGTG GTGGTCTTTT TAGCGGACTG GGACAGTCTG 
CTATGCAGCA ACCCCAACAG CAACAGCAAC AACTGCAACC TAGTCTCACG GCGTCCATCG 
ACCAAAACCC ATACGGAAAC AACCCCCTCT TTGCGTACAG TGGTCAAAAG CTTGAAATTG 
GCTCGCAGTC CAAGAAGCCG GCGCTCCCCC CTCTTACTGC ATCATCTTAC CGTCTCACCC 
CCTCGACCAA CAAGTCTAAG ATCAACAAAC TTCGTGGCTT CGCGTCTCCC CTCAATGTGT 
CTCAGAGCCC TGGCCGATCC GGTAGCCCTC TTTCTGTCAG CTCCCCTGGT CGTTCGAGCA 
TGTTCAACTC TCCCGCTGCT CCCGACAGGT ATAAGGGTCT GAGTGACACC GCCCTGACCC 
CCAATGCCTT TGTGCCGCGT CCAAACATTA AGAAACTCTC GGTGACACCG AATATTGGCA 
GCTCCATTGG CGGTAATGAC CAGCTGGAGT CTGTCCTTGG CAAATCAGCT CTCAAGGCCT 
CCACGAGCTC CCTCAAGGGT AGTACTTCTA CCCTTCAGAC ACCTGGTACT CCTCTTGTAT 
TCCATCCTCC TGTAAATGGT ACACCTTCCC GTCCTGAGAT CGCCGAATCT TCAGTCACCC 
GATCAACCTC AGCCATCGCA TCACCCCGAG TTGCTGGGTC TGAGCGTGCG CCCAAGAAAG 
GCGATTATTG GTGTAGACCA AAGTTGGAAA AGCTCGAACA AATGAGCAAA GAAGATCTCT 
CCCAGCTGAG TGGTTTCACT GCAGGTCGAC GTGGTTTCGG TGAAGTTTCA TTCCTTGAAC 
CTGTTGATTT GACACTTGCC CCCTTGGAAG ATATTCTTGG CTCTATAATA GTCGTTGACC 
AATCTGAGCT CTCTGTCTAC CCCGACGACT ATTCTCAAAA ACCTGAAAGA GGCCAAGGCC 
TGAATGTGCC AGCTAGAATC ATGCTCGAGA ATGTATTCAC CACGGACAAA GCGACCAAAG 
ACTGGGTGCG AGACCCTGAA GATCCAAGAT TCCAGAAGTT TGTTAGGCGT GTTAAGGCTA 
TTCCTGACAC CGAATTCATC AGTTATACTG ATGATGGGAC CTGGACCTTC CGTGTGGAGC 
ACTTTACGAC CTATGGTATC GCCGATAGTG ACGAGGATGA AAGTATTGAA AATGGGGACC 
TGGGAAGGCG GAGGGAAGGT GTTGCCAGGA AATTTTCCAG ATCTCCATCG GAGACGTCAG 
CAGAGGACGA CGATGATATG TTTCTTCCTA CCAAGAGTAT CCGGGATGTT GAAGCTGAGC 
ATGACTCTGG GTTTGAAGAG GACCAGCTTT CAGAAAAGTC TTATATGGAA GATGGGCTGA 
CAGAGGCGGA TGAGAGCGGT GAGATGGATT TTCCTGAAGC TAGTTGGGAC CTTCCCATCA 
AATCGCAACT GGGAGCGGAG GGAATGAAGA ATTTGCGAGG CATGCAAGAC TCCTTTTTCG 
GGTCTTCTGC GTCTATGACA AGACCTGGGA AAGAGTTAGC AATGTCAAAG AAGAGGGAAG 
CCGAGAAGGG ATATGAGTCG TTTTTTCGTG AAGCCGAAGG GGAAAATGTG AAGCTTGATG 
AGCGGGCTAT CAAGGTATGT TGTCTTCGTT GGGGCCTAAA TTTTGCTCTG TATTAACTGT 
ACCATAGCGG ACCTCTTTCG GCGAGACCCA AATAAGCCTG CCCAAACTTC GTCAACCAAG 
GAAGTATGCG AGAGTAACTG AGGAAGAGAG TGTGGCCAAG GGAGCAGAGG GGCTAAGAGT 
GGACGCAGGA TTGGCGTCAG GGAGATCATT CAGATGTTCT TGGGGTCCAA ACGGAGAGCT 
GGTACACATT GGAAAGATTT GTTCGCCGAC TGAGTCAGTG TGAGTGTAAA TTACGTTTGA 
ACTGGCGAGA TTCATCCGTT GACGTAAATA GTCGAGCGGA CACCGATGCC GTTGTCTATA 
TCGAGAAGGT GGAGGTACTA TCGGAAGAAA CCGAGGTGGA AACATCCAAG TCTCAAAGAC 
TACTCTCCCT CCACCTGGAG ACCAGCTTAA TTGAACAGGT GCAGGGTGTG CCAACAGCTA 
CCATCAACCC AGGCATACGG TTCCACGACT TTGCTTCTCG ATTTGACCCA GGTGATCGCT 
CTCACGAAGC CAACGTTTTC CGTCTTGGTG TTGCCCTTTT CGATGAGATT GATGTTCAAC 
TTCCTGAAGG GTCATCGGAA GAGCTTATCG AACGCATTTC GTCAATCCGC CGAAAGCTGG 
CTTTGTCCAG GTGGTTGGAA GATGCTGTTG CTCCTTTGGT TGATTCCGAT CTAATAACTC 
GAAGCGAGGA CCAGCCAGGC AAGATTTTCT CTCTTCTGAG CGGCCATCAA GTCGAGCATG 
CTGTCGAGTC TGCTTTGGAG GCCGGCAATA TGAGGTTAGC AACGTTATTG TCCCAAGCGG 
GTGGAGAAGA AAGTTTTAAA GACGAACTCT TGAAGCAGTT GGAAGACTGG CAGGCGTACA 
AGGTGAACCC TCTAATCGCT GTTGGTTACC GGAAACTCTA CGCTCTTTTG GCCGGTATCA 
CCGATATTTC AGCCGGCGAT CCGTCTCGAG GGTCTGATGG GTGTCCTGAC GTTTTGATTG 
CTGAAGGTCT TGACTGGAAG CGTGCATTCG GTCTTCATCT TTGGTACGGT ATACCTTTTG 
AAAATACCAT CCGAGATGTC GTCGACTCTT ATACCTTTTC TCTCTCATCT TCTCATCCAC 
CTGCTAAACC TCTTCCGCCA TACCTTGAGA AATCATCCGA CAACATTCGT TCCTGGAATC 
TTCCCACTGA ACCTACAGAT GTTCTGTACA ATCTTCTTCA ACTTTATTCC GACGACGCCA 
TCTCTCTTGA CCAGGTACTT CGATCGCGAG ACACATCTCC TAGCCCATTT GACGTGCGGT 
TAGCATGGCA TCTTTACGTG TTGCTTTCCA GAGTGTTGAG AAGAAGAGAC TTTGAAGATA 
GGGATGAGAG TAGTGGATAC AGTGCGAACG CTGACCGATT GACGGCGGCT TATGCTGCGC 
AATTGGAAGA GATTGGCGAA TGGAAGTGGG CTGCCTTTGT ATTGTTGCAC CTCGAGACAG 
TCGATGGGTG AGTCTGCATG TGTTTTAGGT AATAGAGGAG CTGATCTGTT TCATTAGGCG 
TTTCAAGGCT CTTCATGCCC TTCTTTACCG ACATCCGGCC ATTACTAAAG AAGATCAAGC 
TTTTTTGACG GAAACTCTCT GCATTCCTGA AGAATGGATA CACGAATCTC GAGCAGCTTC 
CCTCTGTTCG ACTGGTGATG CCTGGGGCGA GTATCATGCT CTTCTTCAAG CCAAGATCTA 
CGATCGGGCG CACAAGATAC TTGTGGAGAA GTTGGCCCCA GAGGCGGTCT TGAGGGATGA 
CAAGGCTCTT TTGAGAAGGT TGTGCTTAAA GCTGGAAGAC AAGGGTGTTT CCGGTTGGGA 
GTATGGCGGA AAGGTAAGTG ATCGACGTAA AGAGGGTGGA TATCTGCTTA CTCTGTTTCT 
AGTTGTTCTT GGAATGGGCC GACAATTCGG AAGATACCGT TCGGCTCGCT CGCGTTAGCG 
GGCAACCAGT ACCCCCGACG TCCCACTTTC TATCTGTTTT CAATTCCATA TCACTCGCTT 
AAATCTCATC GTACGGCTTT CAAACCTGTA TCATTGAACT GAGCTCAGGT CCGTGCCAAA 
AATACCGAAT ATGCATTCTA TACACCTCTG GGTCACTTAG TTGAAATTGG CTGAAGGCGT 
GTCTTTAGGC GCCCACAAAT AGGCTTTAGG CATGCACTTC TTACCACTTT TT 

 

Protein sequence

MPDNAVVMSA VQSSSGASSS HYSSGVTQTT ATFFLLFNPF LPYLLPDISP AEEEAATRKS 
WYSQQHLATM FGSTSAWGQN NQNQQQQQGG GLFGGGGGGT FGQQNTGGFG QSGTATGFGQ 
PTQNTGGVFG GGATTNTGFG GFGASNQQQQ PQQSNAFGAA RPAFGASGST FGQNTTGGGL 
FGSSNTANTG FGSNTSNTSG GGLFGAKPAT STFGSGATSN LFGAKPSTGF GASSNTQEVL 
KGPAELQTYR TDVPPPPPPS TGTANPIYYP TWQADPSTNT ALGKEGPPHL FHSITAMLPY 
RGCSWEELRA LDYQQGRKEA TPQQQNAFGA SSAGGFGQPA STGFGQQPAT TGFGAKPAGA 
GLFGSSSPAT GFGSTTSNTS TGFGASNTNT GGGLFGQSQP QQGSSLFGQT NTNTGGGLFG 
QTQPQQSTGG GLFGSSNTST TNPFGGAQTT QQPQATSTFG GFGQSKPAFG STGTTGFGTG 
STGTSTFGQT GTGTTGFGGF GQTQPQQQQQ QQQQPTTGGG LFGGGGFGAT NTQQQAPGTG 
LFGQTAQQQQ PAATGFGAAK PGGLFGSTTT PASTNTGFGG FGQTSNTSQP AGTGLFGSTN 
TNTNTTGGGL FGQTQPQQTT QQPATGGGLF GSTNAAPATG GGLFGAKPAT TTAPSTGLFG 
QTQPTQQPAQ TGGGLFGNTA STTGGGLFGS TTNNSLGQLG QQNQQSGGGL FGAKPATGGG 
LFGGASATGT GTGLFGQQPQ QQQQQQPQTG TTGGLFGNLG QSQPASTGLF GSTTTQPAQQ 
STFGGGGLFS GLGQSAMQQP QQQQQQLQPS LTASIDQNPY GNNPLFAYSG QKLEIGSQSK 
KPALPPLTAS SYRLTPSTNK SKINKLRGFA SPLNVSQSPG RSGSPLSVSS PGRSSMFNSP 
AAPDRYKGLS DTALTPNAFV PRPNIKKLSV TPNIGSSIGG NDQLESVLGK SALKASTSSL 
KGSTSTLQTP GTPLVFHPPV NGTPSRPEIA ESSVTRSTSA IASPRVAGSE RAPKKGDYWC 
RPKLEKLEQM SKEDLSQLSG FTAGRRGFGE VSFLEPVDLT LAPLEDILGS IIVVDQSELS 
VYPDDYSQKP ERGQGLNVPA RIMLENVFTT DKATKDWVRD PEDPRFQKFV RRVKAIPDTE 
FISYTDDGTW TFRVEHFTTY GIADSDEDES IENGDLGRRR EGVARKFSRS PSETSAEDDD 
DMFLPTKSIR DVEAEHDSGF EEDQLSEKSY MEDGLTEADE SGEMDFPEAS WDLPIKSQLG 
AEGMKNLRGM QDSFFGSSAS MTRPGKELAM SKKREAEKGY ESFFREAEGE NVKLDERAIK 
RTSFGETQIS LPKLRQPRKY ARVTEEESVA KGAEGLRVDA GLASGRSFRC SWGPNGELVH 
IGKICSPTES VRADTDAVVY IEKVEVLSEE TEVETSKSQR LLSLHLETSL IEQVQGVPTA 
TINPGIRFHD FASRFDPGDR SHEANVFRLG VALFDEIDVQ LPEGSSEELI ERISSIRRKL 
ALSRWLEDAV APLVDSDLIT RSEDQPGKIF SLLSGHQVEH AVESALEAGN MRLATLLSQA 
GGEESFKDEL LKQLEDWQAY KVNPLIAVGY RKLYALLAGI TDISAGDPSR GSDGCPDVLI 
AEGLDWKRAF GLHLWYGIPF ENTIRDVVDS YTFSLSSSHP PAKPLPPYLE KSSDNIRSWN 
LPTEPTDVLY NLLQLYSDDA ISLDQVLRSR DTSPSPFDVR LAWHLYVLLS RVLRRRDFED 
RDESSGYSAN ADRLTAAYAA QLEEIGEWKW AAFVLLHLET VDGRFKALHA LLYRHPAITK 
EDQAFLTETL CIPEEWIHES RAASLCSTGD AWGEYHALLQ AKIYDRAHKI LVEKLAPEAV 
LRDDKALLRR LCLKLEDKGV SGWEYGGKLF LEWADNSEDT VRLARVSGQP VPPTSHFLSV 
FNSISLA