Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3177 |
Symbol | rpoN |
ID | 4186103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 3617513 |
End bp | 3618964 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638073170 |
Product | RNA polymerase, sigma-54 factor |
Protein accession | YP_679760 |
Protein GI | 110639550 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAAT TAAGTATTCA GCAGCAGTTA TCTCAGAAAC TATCTCCCCA GCAGATTCAG TTTATAAAAC TATTGCAGAT ACCGGCAGCA GAATTAGAAT CCCGTATTGA AGAAGAACTG GAGATAAACC CTGCATTAGA AGAAGGAAAA GAAGAGCAGG CAGAGGAAAA AGATTCCAAT GAAGAAGAAT TTTCAGATTC AGATGATGAT TATTCAGATG ATGAACTGGA TGTTCAGGAA TATATCCGCG ATGAAGATGT AGCCGGCTAT AAAATGCAGG GCGACGGGCC ATCGCAGGAC GATGAAGAGC GTGAATCTCC ATTAGCAGGA ACAACTTCTT TAACCGAAAT GCTTTTAAAT CAACTGGGTT TTTTACGCCT GGATGAACGG CAGACAAAGA TTGCCGAACA GTTGATTGGC AGCATTGATG AAGATGGATA TATCCGCCGG AATTTAGATC TGATTGTTGA TGACCTGGCC TTCTCTCAAA ACATTGAAAC CAATGTAGAA GAGATTGAAG AGGTCTTATT CCGCATACAG GACTTTGACC CTGCAGGCAT TGGTGCACGC GACTTACAGG AATGTTTGCT GTTACAGATC GAACGCAGAC ATATGGATGA GCCTGAGGTT ATGCTTGCAC ACAACATCTT GAAAGATTGC TTTGATGAGT TTACAAAAAA ACATTACGAC AAAATTCAAA AGAAATTTGA CGTAGATGAT GAATCTATAA AAGCTGCGGT TAATATCATC ACCAAGCTGA ACCCTAAGCC AGGCGGCACT TCCGGAGATG ATATCAAAAC ACAATATTTA ATGCCTGATT TTATTCTGCA AACAAATAAC GGCGAACTGG AATTGTTTTT AAATTCTAAA AACGCACCGG ACTTACGCGT AAGCAGAAAT TATTCTGAAA TGTTTGAGAC GTACGACAAG AGCGCTAAGA ATGATAAAAA ACTGAAGGAA GCTGTCACGT TTGTAAAACA AAAACTGGAT GCTGCGAAAT GGTTTATTGA AGCGATCAAA CAGCGCCAGC AAACGTTACT GAAAACCATG CATGCTATTT TAGAATTCCA GAAAGAATTC TTTTTTGAAG GGGATGAAAG TTATTTAAAA CCGATGATCC TGAAAGATAT TGCGGATATG GTGAACATGG ATATTTCAAC CATTTCACGC GTTGCAAATA GTAAAGCTGT ACAGACGGAA TTTGGAATCT ATCCGCTGAA ATATTTCTTT TCTGAAGGTA TCGCGACCGA CTCCGGCGAA GATGCCAGCA GCCGGGAAGT AAAACATATT CTGAAAGAAA TCATCGACGG AGAGCAAAAG AAGAAGCCGT TGTCGGATGA GAAGTTAGAG AAAGAATTGA ATAAAAGAGG GTATAACATT GCACGAAGAA CGGTTGCAAA ATACCGCGAA CAATTGAACA TTCCGGTAGC ACGTTTAAGA AAGGAATTAT AA
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Protein sequence | MQKLSIQQQL SQKLSPQQIQ FIKLLQIPAA ELESRIEEEL EINPALEEGK EEQAEEKDSN EEEFSDSDDD YSDDELDVQE YIRDEDVAGY KMQGDGPSQD DEERESPLAG TTSLTEMLLN QLGFLRLDER QTKIAEQLIG SIDEDGYIRR NLDLIVDDLA FSQNIETNVE EIEEVLFRIQ DFDPAGIGAR DLQECLLLQI ERRHMDEPEV MLAHNILKDC FDEFTKKHYD KIQKKFDVDD ESIKAAVNII TKLNPKPGGT SGDDIKTQYL MPDFILQTNN GELELFLNSK NAPDLRVSRN YSEMFETYDK SAKNDKKLKE AVTFVKQKLD AAKWFIEAIK QRQQTLLKTM HAILEFQKEF FFEGDESYLK PMILKDIADM VNMDISTISR VANSKAVQTE FGIYPLKYFF SEGIATDSGE DASSREVKHI LKEIIDGEQK KKPLSDEKLE KELNKRGYNI ARRTVAKYRE QLNIPVARLR KEL
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